Showing : hgu133plus2 • reset
0
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Fail to install hgu133plus2.db
org.Hs.eg.db hgu133plus2
updated 5 months ago by 67k • written 5 months ago by • 0
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1
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523
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Error: package ‘hgu133plus2’
hgu133plus2
updated 20 months ago by 4.1k • written 20 months ago by • 0
2
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1
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2.2k
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.9 years ago by ▴ 20 • written 11.8 years ago by ▴ 340
5
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4
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3.7k
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
7.0 years ago rahil ▴ 30
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4
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2.5k
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hgu133plus2cdf cant download
normalization hgu133plus2
7.2 years ago marion.ryan • 0
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4
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4.9k
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 840
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4
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1.6k
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about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 7.8 years ago by ▴ 10 • written 15.6 years ago by ▴ 430
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2
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HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation hgu133plus2
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
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2
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
9.7 years ago • updated 8.2 years ago IOM ▴ 20
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5
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2.5k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.7 years ago by ▴ 110 • written 12.6 years ago by ▴ 760
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2
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 9.0 years ago by ▴ 370 • written 9.0 years ago by • 0
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3
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2.6k
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
9.8 years ago kanacska ▴ 10
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3
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2.2k
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Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 9.8 years ago by 67k • written 9.8 years ago by ▴ 10
2
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2
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1.5k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 10.0 years ago by 67k • written 10.0 years ago by • 0
0
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2
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2.2k
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HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
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1.3k
views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
10.3 years ago Guest User ★ 13k
0
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1
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1.7k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 10.3 years ago by ▴ 390 • written 10.3 years ago by ▴ 10
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0
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9.3k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.5 years ago Guest User ★ 13k
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5
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2.4k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 10.6 years ago by 52k • written 10.6 years ago by ★ 13k
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3
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2.4k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 10
0
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0
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890
views
Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2 probe hgu133plus2 probe
10.7 years ago Ulrik Stervbo ▴ 30
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1
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14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ★ 13k
0
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1
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2.9k
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annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 11.0 years ago by ★ 3.9k • written 11.0 years ago by ▴ 10
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1
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2.1k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 11.1 years ago by ▴ 80 • written 11.1 years ago by ▴ 20
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4
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4.0k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 11.1 years ago by 67k • written 11.1 years ago by ★ 13k
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0
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1.4k
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virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
11.1 years ago Guest User ★ 13k
0
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0
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1.8k
views
Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
11.1 years ago Guest User ★ 13k
0
votes
2
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1.4k
views
segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 11.2 years ago by ★ 1.2k • written 11.2 years ago by ▴ 70
0
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0
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1.8k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.2 years ago b a ▴ 40
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0
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1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.2 years ago b a ▴ 40
0
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2
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1.8k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 11.4 years ago by ▴ 240 • written 11.4 years ago by ★ 1.1k
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1
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1.9k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 11.5 years ago by 67k • written 11.5 years ago by ▴ 90
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2
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2.1k
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Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 40
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2
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1.8k
views
inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
11.5 years ago Ed Siefker ▴ 230
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0
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1.4k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.7 years ago Daniel Emden ▴ 10
0
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0
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1.3k
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
11.8 years ago Kishor Tappita ▴ 340
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2
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1.3k
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Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 12.1 years ago by ★ 2.0k • written 12.1 years ago by 52k
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4
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3.0k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ★ 13k
0
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6
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1.9k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 12.6 years ago by ▴ 210 • written 12.6 years ago by ▴ 240
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3
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1.6k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.7 years ago Mayte Suarez-Farinas ▴ 510
0
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1
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1.4k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.7 years ago by 67k • written 12.7 years ago by ▴ 240
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3
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1.5k
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 12.7 years ago by 67k • written 12.7 years ago by ▴ 120
0
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2
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2.6k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 12.8 years ago by ★ 1.9k • written 12.8 years ago by ▴ 230
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4
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1.5k
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
12.8 years ago Fabrice Tourre ▴ 970
0
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1
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1.4k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.8 years ago by ▴ 830 • written 12.8 years ago by ▴ 20
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1
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1.1k
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 12.9 years ago by 67k • written 12.9 years ago by ★ 13k
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1
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1.5k
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refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 240
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0
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937
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Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2 hgu133plus2
13.0 years ago Guest User ★ 13k
0
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4
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1.9k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 380
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1
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1.1k
views
a question for SPIA package
Annotation hgu133plus2 Annotation hgu133plus2
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 380
50 results • Page 1 of 1
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Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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