Showing : hgu133a • reset
2
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3
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hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
7.0 years ago Chris Mancuso • 0
2
votes
1
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1.2k
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How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 260
2
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2
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1.5k
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around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
2
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3
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1.7k
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unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.9 years ago by 52k • written 7.9 years ago by ▴ 50
0
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4
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1.6k
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TimmR error for hgu133a.db
software error annotate hgu133a
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
6
votes
5
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Is filtering necessary to extract significant DE genes with limma ?
hgu133a
updated 8.9 years ago by 52k • written 8.9 years ago by ▴ 40
1
vote
3
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2.2k
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Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.9 years ago by 68k • written 8.9 years ago by ▴ 40
0
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5
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2.5k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.9 years ago by ▴ 110 • written 12.8 years ago by ▴ 760
0
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5
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How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 9.8 years ago by • 0 • written 10.8 years ago by ★ 13k
0
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1
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1.9k
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Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a rma normalization affy
updated 9.9 years ago by ▴ 840 • written 9.9 years ago by • 0
0
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0
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1.7k
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[phenoTest package]: gsea.kegg error with absVals parameter
Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest
10.9 years ago Kostas Kerkentzes ▴ 10
0
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1
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2.9k
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annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 11.2 years ago by ★ 3.9k • written 11.2 years ago by ▴ 10
0
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0
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.4 years ago b a ▴ 40
0
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0
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1.2k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.4 years ago b a ▴ 40
0
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1
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1.7k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by ▴ 600
0
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1
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1.6k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a probe affy SCAN.UPC hgu133a probe affy SCAN.UPC
updated 12.0 years ago by ▴ 20 • written 12.0 years ago by ▴ 600
0
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2
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1.5k
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results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 12.3 years ago by 68k • written 12.3 years ago by ★ 13k
0
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2
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1.3k
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retrieve expression of all probes in the probe set
hgu133a probe hgu133a probe
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 240
0
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1
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1.4k
views
Annotate Affy SNP6 probes in bioc
hgu133a annotate hgu133a annotate
updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 170
0
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0
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1.5k
views
Gviz : UcscTrack ..
GO hgu133a GO hgu133a
12.6 years ago Tim Smith ★ 1.1k
0
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4
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1.7k
views
errors in FRMA
Annotation hgu133a2 hgu133a frma Annotation hgu133a2 hgu133a frma
updated 12.9 years ago by ▴ 830 • written 12.9 years ago by ▴ 510
0
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3
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1.6k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.9 years ago Mayte Suarez-Farinas ▴ 510
1
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0
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1.2k
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problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
13.5 years ago Sean Davis 21k
1
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0
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1.2k
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problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
13.5 years ago Zhe Liu ▴ 90
0
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5
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1.9k
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R crashes with GEOmetadb
hgu133a hgu133a
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 4.1k
0
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2
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2.2k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 110
0
votes
1
reply
994
views
How to get all qualified GEO Platform records in R
hgu133a GEOquery hgu133a GEOquery
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 240
0
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6
replies
1.6k
views
mapping probe sets from yeast2 array to probe sets in hgu133A
hgu133a yeast2 probe hgu133a yeast2 probe
updated 14.6 years ago by ▴ 60 • written 14.6 years ago by ▴ 350
0
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1
reply
935
views
phenotypic information of ALLMLL data set
hgu133a hgu133a
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 840
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1
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1.8k
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CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 15.1 years ago by ★ 2.9k • written 15.1 years ago by ★ 1.1k
0
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0
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lambda and other questions related to siggenes
GO hgu133a siggenes GO hgu133a siggenes
15.2 years ago John Lande ▴ 280
0
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1
reply
1.9k
views
getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 15.3 years ago by ▴ 600 • written 15.3 years ago by ★ 1.1k
0
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2
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1.5k
views
goTools package, ontoCompare error
Microarray GO hgu133a Microarray GO hgu133a
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 20
0
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1
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1.6k
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FW: function error for "hyperGTest" in Category package
Annotation GO hgu133a probe GOstats Category Annotation GO hgu133a probe GOstats
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 60
0
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1
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1.2k
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 15.4 years ago by ★ 7.4k • written 15.4 years ago by ▴ 50
0
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2
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1.4k
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biomaRt query
GO hgu133a GO hgu133a
updated 15.4 years ago by ▴ 600 • written 15.4 years ago by ★ 1.1k
0
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2
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1.1k
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Extract top-ranked genes from model fit
Annotation GO hgu133a Annotation GO hgu133a
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 310
0
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3
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1.6k
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Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Annotation GO hgu133a Annotation GO hgu133a
updated 15.6 years ago by ▴ 950 • written 15.6 years ago by ★ 2.0k
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1
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1.2k
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Bug in metaArray package
GO hgu133a MergeMaid metaArray GO hgu133a MergeMaid metaArray
updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 500
0
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2
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2.1k
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how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
15.7 years ago Venkat Sundar ▴ 30
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0
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1.1k
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
15.7 years ago Paolo Sonego ▴ 140
0
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1
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1.4k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 15.7 years ago by ▴ 60 • written 15.7 years ago by ▴ 50
0
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0
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819
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MAS5 to selected average
hgu133a affy hgu133a affy
15.8 years ago James W. MacDonald 68k
0
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0
replies
766
views
MAS5 to selected average
hgu133a hgu133a
15.8 years ago Dr Gyorffy Balazs ▴ 320
0
votes
3
replies
1.9k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 100
1
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3
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1.5k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.8 years ago by ★ 6.5k • written 15.8 years ago by ▴ 350
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0
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1.0k
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Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
15.8 years ago Hervé Pagès 16k
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votes
9
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1.9k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 30
0
votes
2
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1.8k
views
KEGGgraph, error
Organism hgu133a KEGGgraph Organism hgu133a KEGGgraph
updated 15.9 years ago by ▴ 20 • written 15.9 years ago by ▴ 380
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1
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1.8k
views
Limma: 2 venn diagrams on single page
hgu133a limma hgu133a limma
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 120
50 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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