Showing : heatmaps • reset
0
votes
2
replies
550
views
DESeq2 Heatmap
heatmaps
updated 12 weeks ago by ★ 1.4k • written 12 weeks ago by • 0
0
votes
3
replies
885
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 5 months ago by 68k • written 5 months ago by ▴ 50
1
vote
5
replies
1.7k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 7 months ago by • 0
2
votes
1
reply
1.1k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 8 months ago by ★ 4.8k • written 8 months ago by • 0
0
votes
0
replies
305
views
Error in drawHeatmap function
GeneOverlap heatmaps
10 months ago • updated 9 months ago Johanna • 0
0
votes
2
replies
990
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
1
reply
2.1k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 17 months ago by ▴ 780 • written 17 months ago by • 0
0
votes
1
reply
2.3k
views
edgeR heatmap construction and interpretation
heatmaps
updated 17 months ago by 52k • written 18 months ago by • 0
0
votes
3
replies
1.1k
views
Installing Gpart
gpart heat heatmaps
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
2
replies
1.1k
views
Drawing a heatmap with only limited genes
heatmaps
updated 21 months ago by • 0 • written 21 months ago by • 0
1
vote
1
reply
779
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.0 years ago by ▴ 80 • written 2.1 years ago by ▴ 10
0
votes
1
reply
979
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by • 0
0
votes
2
replies
1.5k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.1 years ago shuangshuang • 0
0
votes
0
replies
1.3k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.2 years ago gianni.drm • 0
0
votes
1
reply
1.1k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by ▴ 10
2
votes
3
replies
1.7k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by ▴ 10
2
votes
2
replies
1.0k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.2 years ago Sooni ▴ 10
4
votes
5
replies
5.7k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.2 years ago by 52k • written 2.3 years ago by ▴ 10
2
votes
5
replies
2.4k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.3 years ago Katharina • 0
0
votes
1
reply
3.8k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
0
votes
3
replies
1.9k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
0
votes
1
reply
2.2k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.6 years ago by ▴ 290 • written 2.6 years ago by • 0
1
vote
1
reply
1.4k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
2
replies
7.1k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.8 years ago Bhavana • 0
0
votes
3
replies
1.8k
views
Persisting error in making a heatmap
heatmaps gplots
2.8 years ago beslinail • 0
1
vote
1
reply
1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by • 0
0
votes
2
replies
2.1k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.8 years ago Clara ▴ 10
0
votes
1
reply
3.2k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by ▴ 10
1
vote
1
reply
1.2k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
4
votes
5
replies
1.8k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
0
votes
0
replies
922
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
32 results • Page 1 of 1
Recent ...
Replies
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k
If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…
Comment: fast apply on RleList by story.benjamin ▴ 20
Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…
Answer: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k
Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…
Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0
Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …
Votes
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Limma outputs different results for same sample?
Awards • All
Popular Question to story.benjamin ▴ 20
Popular Question to snijesh ▴ 200
Popular Question to Gordon Smyth 52k
Popular Question to pcantalupo ▴ 10
Popular Question to bioinformaticssrm2011 • 0
Locations • All
UPF, Barcelona, Spain, 5 minutes ago
The city by the bay, 7 minutes ago
San Diego, 30 minutes ago
Canada, 55 minutes ago
Seattle, WA, United States, 1 hour ago
Traffic: 451 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6