Showing : heatmaps • reset
0
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DESeq2 Heatmap
heatmaps
updated 16 days ago by ★ 1.4k • written 17 days ago by • 0
0
votes
3
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541
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 3 months ago by 67k • written 3 months ago by ▴ 50
1
vote
5
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1.3k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 5 months ago by • 0
2
votes
1
reply
727
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 5 months ago by ★ 4.6k • written 5 months ago by • 0
0
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0
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264
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Error in drawHeatmap function
GeneOverlap heatmaps
7 months ago Johanna • 0
0
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2
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771
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 8 months ago by 67k • written 8 months ago by • 0
0
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1
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1.7k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 15 months ago by ▴ 780 • written 15 months ago by • 0
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1
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2.0k
views
edgeR heatmap construction and interpretation
heatmaps
updated 15 months ago by 52k • written 15 months ago by • 0
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3
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1.0k
views
Installing Gpart
gpart heat heatmaps
updated 15 months ago by 67k • written 15 months ago by • 0
0
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2
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1.0k
views
Drawing a heatmap with only limited genes
heatmaps
updated 19 months ago by • 0 • written 19 months ago by • 0
1
vote
1
reply
729
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 22 months ago by ▴ 80 • written 22 months ago by ▴ 10
0
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1
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913
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 23 months ago by ★ 4.6k • written 23 months ago by • 0
0
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2
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1.4k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
23 months ago shuangshuang • 0
0
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0
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1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
24 months ago gianni.drm • 0
0
votes
1
reply
945
views
struggling to create a heatmap
DESeq2 heatmaps
updated 24 months ago by ★ 4.6k • written 24 months ago by ▴ 10
2
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3
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1.5k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.0 years ago by ▴ 40 • written 2.0 years ago by ▴ 10
2
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2
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918
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.0 years ago Sooni ▴ 10
4
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5
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5.1k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 24 months ago by 52k • written 2.1 years ago by ▴ 10
2
votes
5
replies
2.2k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.1 years ago Katharina • 0
0
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1
reply
3.5k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
0
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3
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1.8k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
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1
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2.0k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.4 years ago by ▴ 290 • written 2.4 years ago by • 0
1
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1
reply
1.3k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
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2
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6.0k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.6 years ago Bhavana • 0
0
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3
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1.6k
views
Persisting error in making a heatmap
heatmaps gplots
2.6 years ago beslinail • 0
1
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1
reply
1.0k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.8 years ago by 67k • written 2.8 years ago by • 0
0
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1
reply
1.4k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.4 years ago by ▴ 40 • written 3.4 years ago by • 0
0
votes
2
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2.0k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.6 years ago Clara ▴ 10
0
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1
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3.0k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by ▴ 10
1
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1
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1.1k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 30
4
votes
5
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1.7k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
0
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0
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892
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.9 years ago by 67k • written 5.9 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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