Bioconductor Genomic

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genomic EpiDISH

updated 24 months ago by shijieczheng • 0 • written 24 months ago by bony.dekumar ▴ 10

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1.2k

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GenomicRanges Genomic

3.4 years ago Daniel Cameron ▴ 40

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5.2k

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genomic AnnotationHub GenomicRanges org.Hs.eg.db

4.1 years ago • updated 3.9 years ago rohitsatyam102 ▴ 20

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IRanges GenomicRanges

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by kalamari • 0

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1.0k

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computational genomic big data bioinformatics Job

5.6 years ago jmaanaki • 0

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1.7k

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dnacopy dnaseq genomic cn.mops cnv

updated 6.5 years ago by Günter Klambauer ▴ 540 • written 6.5 years ago by Cased • 0

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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.

Answer: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k

See [Section 4][1]. But do note that you do not need for the `phenoData` slot to contain the data. You can simply have a 'targets' data.fra…

Comment: Want numbers in DESeq to be seen as numerical, not categorical by swbarnes2 ★ 1.4k

How did you import the data? Did you accidently leave in `stringAsFactors=True`? But I'm not entirely sure that you don't want that to be…

Comment: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

By version 1.38.0, I mean version 1.38.0 of `MissMethyl`.

Answer: MissMethyl failed to use gometh function for EPICv2 by James W. MacDonald 67k

You need to [upgrade to the release version of Bioconductor][1]. You have version 1.38.0 installed which indicates that you are using the p…

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Comment: How do I fix an odd voom plot in a combined dataset?

Comment: Theoretical WGCNA Question

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a

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Scholar to Michael Love 43k