Showing : genomes • reset
0
votes
3
replies
389
views
ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 9 weeks ago by • 0
0
votes
0
replies
112
views
ChIP peaks comparison
ChIPSeqData genomes ChIPSeq
15 days ago user_bioinfo • 0
0
votes
0
replies
118
views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes RNASeq
16 days ago brayas13 • 0
0
votes
1
reply
248
views
probe ID search for SNP (plink)
genomes
updated 21 days ago by 67k • written 22 days ago by • 0
1
vote
6
replies
685
views
New to Deseq2 - DEG questions / MA plot
genomes DESeq2 Transcriptomics
updated 4 weeks ago by ★ 4.5k • written 8 weeks ago by • 0
0
votes
0
replies
179
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
8 weeks ago Fernanda • 0
0
votes
1
reply
259
views
For feline genome
genomes Analysisoffelinegenome
updated 8 weeks ago by 67k • written 8 weeks ago by • 0
2
votes
5
replies
650
views
Trying to convert ATACseq annotations of non-model species into human orthologs, but not sure of what to do.
genomes ATACSeq
9 weeks ago ronin • 0
0
votes
0
replies
245
views
Mark seleced variables in the x-loading plot
OPLS genomes Proteomics
9 weeks ago Ragnhild • 0
0
votes
0
replies
268
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
12 weeks ago Aleena ▴ 30
0
votes
0
replies
600
views
Job: Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
genomes
12 months ago JP Carter ▴ 40
0
votes
0
replies
588
views
Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
12 months ago JP Carter ▴ 40
1
vote
1
reply
557
views
MSc student
genomes
updated 22 months ago by ▴ 780 • written 22 months ago by • 0
0
votes
2
replies
3.3k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.7 years ago by • 0
0
votes
0
replies
1.0k
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics genomes R MultipleSequenceAlignment Bioconductor
3.3 years ago • updated 3.2 years ago K. • 0
1
vote
0
replies
1.6k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
7.1 years ago bulfin.triona ▴ 10
0
votes
0
replies
1.2k
views
How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
bioconductor annotation rtracklayer genomes homo.sapiens
7.4 years ago sivabala76 • 0
0
votes
5
replies
1.7k
views
Extracting all possible annotations between two genomic coordinates
genomes
7.8 years ago • updated 7.7 years ago KB ▴ 50
0
votes
0
replies
1.2k
views
vizualization of mutations
genomes SNP
8.2 years ago Bogdan ▴ 670
0
votes
0
replies
1.9k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
8.2 years ago dtlabmskcc • 0
1
vote
1
reply
1.8k
views
GenomeViz
Proteomics genomes Proteomics genomes
updated 8.8 years ago by • 0 • written 19.8 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Request: Add Macaca fascicularis genome to BSgenome
bsgenome genomes
updated 9.5 years ago by 16k • written 9.5 years ago by • 0
0
votes
0
replies
1.7k
views
Job: Harvard Medical School: Postdoctoral Opportunity
genomes Job
10.1 years ago Doe, Aimee ▴ 40
0
votes
8
replies
3.1k
views
Best practices to find intersection among variants
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 10.2 years ago by ★ 1.3k • written 10.2 years ago by ▴ 220
2
votes
3
replies
5.4k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
10.3 years ago enricoferrero ▴ 660
0
votes
3
replies
1.7k
views
Elephant shark genome
Biostrings genomes Biostrings genomes
updated 10.6 years ago by 25k • written 10.6 years ago by ★ 13k
0
votes
1
reply
2.2k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.6 years ago by ▴ 570 • written 10.6 years ago by ▴ 220
0
votes
1
reply
1.7k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by ▴ 50
0
votes
0
replies
1.7k
views
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
10.6 years ago Hervé Pagès 16k
0
votes
1
reply
1.9k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.6 years ago by ▴ 570 • written 10.6 years ago by ▴ 220
0
votes
5
replies
2.1k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 10.6 years ago by 25k • written 10.6 years ago by ▴ 220
0
votes
3
replies
2.3k
views
Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
10.9 years ago Guest User ★ 13k
0
votes
1
reply
1.8k
views
makeTranscriptDbFromUCSC() error
genomes genomes
10.9 years ago Chris Cabanski ▴ 30
0
votes
2
replies
2.4k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by ▴ 30
0
votes
1
reply
2.4k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment genomes Alignment genomes
updated 10.9 years ago by 16k • written 10.9 years ago by ★ 13k
0
votes
0
replies
1.6k
views
Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
11.0 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
2.0k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome genomes QuasR BSgenome convert BSgenome genomes QuasR
11.1 years ago Michael Stadler ▴ 350
0
votes
1
reply
1.8k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 11.1 years ago by ★ 7.2k • written 11.1 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Lifting over a bam file with Rsamtools and GenomicRanges
GenomicRanges genomes GenomicRanges genomes
updated 11.2 years ago by ★ 11k • written 11.2 years ago by ★ 13k
0
votes
0
replies
1.3k
views
SnpStats - STRING_ELT() error and Fst
genomes genomes
11.2 years ago Voke AO ▴ 760
0
votes
1
reply
1.4k
views
Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 11.5 years ago by ★ 7.2k • written 11.5 years ago by ▴ 70
0
votes
8
replies
3.5k
views
QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 11.5 years ago by ▴ 350 • written 11.5 years ago by ▴ 750
0
votes
2
replies
1.8k
views
QuasR special case alignment
Alignment genomes QuasR Alignment genomes QuasR
updated 11.5 years ago by ▴ 340 • written 11.6 years ago by ▴ 350
0
votes
6
replies
1.8k
views
coverage on very large ReadGappedAlignmentsObject
Coverage genomes Coverage genomes
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 360
0
votes
1
reply
2.1k
views
Help needed! What wrong with VariantAnnotation and TCGA vcfs
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 340
0
votes
0
replies
1.6k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.6 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.5k
views
Biostatistician position in London
Cancer genomes Cancer genomes
11.6 years ago Kathi Zarnack ▴ 110
0
votes
2
replies
1.6k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
11.6 years ago Hervé Pagès 16k
3
votes
4
replies
1.4k
views
Limit on number of sequence files for forging a BSgenome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.7 years ago by ★ 6.5k • written 11.7 years ago by ▴ 220
0
votes
2
replies
1.1k
views
Expected value of finding a sequence (Tim Smith)
genomes genomes
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ▴ 80
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
Australia, 2 minutes ago
France, 3 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
The city by the bay, 2 hours ago
Traffic: 560 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6