Showing : genomes • reset
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1
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233
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I am having issues with bowtie2_build
genomes bowtiew Index
updated 12 weeks ago by 68k • written 12 weeks ago by • 0
0
votes
1
reply
195
views
affymetrix
genomes Annotation
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
1
reply
257
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Correlation between gene clusters
genomes RNASeqData
written 3 months ago by • 0
0
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0
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5
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Spam: <img/src/onerror=alert&#xFEFF;(1337)>
genomes rgu34cprobe
5 months ago <img/src/onerror=alert&#xFEFF;(1337)> 0
2
votes
5
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1.3k
views
Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ("trying to load regions beyond the boundaries of non-circular sequenc…
genomes BSgenome.Mmusculus.UCSC.mm39
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
3
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595
views
ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 7 months ago by • 0
0
votes
0
replies
218
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ChIP peaks comparison
ChIPSeqData genomes ChIPSeq
5 months ago user_bioinfo • 0
0
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0
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243
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Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes RNASeq
5 months ago brayas13 • 0
0
votes
1
reply
378
views
probe ID search for SNP (plink)
genomes
updated 5 months ago by 68k • written 5 months ago by • 0
1
vote
6
replies
1.2k
views
New to Deseq2 - DEG questions / MA plot
genomes DESeq2 Transcriptomics
updated 6 months ago by ★ 4.8k • written 7 months ago by • 0
0
votes
0
replies
376
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
7 months ago Fernanda • 0
0
votes
1
reply
354
views
For feline genome
genomes Analysisoffelinegenome
updated 7 months ago by 68k • written 7 months ago by • 0
2
votes
5
replies
893
views
Trying to convert ATACseq annotations of non-model species into human orthologs, but not sure of what to do.
genomes ATACSeq
7 months ago ronin • 0
0
votes
0
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401
views
Mark seleced variables in the x-loading plot
OPLS genomes Proteomics
7 months ago Ragnhild • 0
0
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0
replies
429
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
7 months ago Aleena ▴ 30
0
votes
0
replies
722
views
Job: Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
genomes
17 months ago JP Carter ▴ 40
0
votes
0
replies
788
views
Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
17 months ago JP Carter ▴ 40
1
vote
1
reply
640
views
MSc student
genomes
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
votes
2
replies
3.8k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 3.2 years ago by • 0
0
votes
0
replies
1.2k
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics genomes R MultipleSequenceAlignment Bioconductor
3.7 years ago K. • 0
1
vote
0
replies
1.7k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
7.5 years ago bulfin.triona ▴ 10
0
votes
0
replies
1.3k
views
How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
bioconductor annotation rtracklayer genomes homo.sapiens
7.8 years ago sivabala76 • 0
0
votes
5
replies
2.0k
views
Extracting all possible annotations between two genomic coordinates
genomes
8.2 years ago KB ▴ 50
0
votes
0
replies
1.3k
views
vizualization of mutations
genomes SNP
8.6 years ago Bogdan ▴ 670
0
votes
0
replies
2.0k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
8.6 years ago dtlabmskcc • 0
1
vote
1
reply
1.9k
views
GenomeViz
Proteomics genomes Proteomics genomes
updated 9.2 years ago by • 0 • written 20.3 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Request: Add Macaca fascicularis genome to BSgenome
bsgenome genomes
updated 9.9 years ago by 16k • written 9.9 years ago by • 0
0
votes
0
replies
1.8k
views
Job: Harvard Medical School: Postdoctoral Opportunity
genomes Job
10.6 years ago Doe, Aimee ▴ 40
0
votes
8
replies
3.3k
views
Best practices to find intersection among variants
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 10.7 years ago by ★ 1.3k • written 10.7 years ago by ▴ 220
2
votes
3
replies
5.7k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
10.8 years ago enricoferrero ▴ 680
0
votes
3
replies
1.9k
views
Elephant shark genome
Biostrings genomes Biostrings genomes
updated 11.0 years ago by 25k • written 11.0 years ago by ★ 13k
0
votes
1
reply
2.3k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.0 years ago by ▴ 570 • written 11.1 years ago by ▴ 220
0
votes
1
reply
1.8k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 11.0 years ago by ▴ 320 • written 11.0 years ago by ▴ 50
0
votes
0
replies
1.8k
views
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
11.1 years ago Hervé Pagès 16k
0
votes
1
reply
2.0k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.1 years ago by ▴ 570 • written 11.1 years ago by ▴ 220
0
votes
5
replies
2.3k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 220
0
votes
3
replies
2.5k
views
Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
11.3 years ago Guest User ★ 13k
0
votes
1
reply
1.9k
views
makeTranscriptDbFromUCSC() error
genomes genomes
11.3 years ago Chris Cabanski ▴ 30
0
votes
2
replies
2.5k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 30
0
votes
1
reply
2.5k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment genomes Alignment genomes
updated 11.4 years ago by 16k • written 11.4 years ago by ★ 13k
0
votes
0
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1.7k
views
Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
11.4 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
2.1k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome genomes QuasR BSgenome convert BSgenome genomes QuasR
11.5 years ago Michael Stadler ▴ 350
0
votes
1
reply
1.9k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 11.5 years ago by ★ 7.2k • written 11.5 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Lifting over a bam file with Rsamtools and GenomicRanges
GenomicRanges genomes GenomicRanges genomes
updated 11.6 years ago by ★ 11k • written 11.6 years ago by ★ 13k
0
votes
0
replies
1.3k
views
SnpStats - STRING_ELT() error and Fst
genomes genomes
11.6 years ago Voke AO ▴ 760
0
votes
1
reply
1.5k
views
Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 11.9 years ago by ★ 7.2k • written 11.9 years ago by ▴ 70
0
votes
8
replies
3.8k
views
QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 11.9 years ago by ▴ 350 • written 11.9 years ago by ▴ 750
0
votes
2
replies
1.9k
views
QuasR special case alignment
Alignment genomes QuasR Alignment genomes QuasR
updated 12.0 years ago by ▴ 340 • written 12.0 years ago by ▴ 350
0
votes
6
replies
1.9k
views
coverage on very large ReadGappedAlignmentsObject
Coverage genomes Coverage genomes
updated 12.0 years ago by 25k • written 12.0 years ago by ▴ 360
0
votes
1
reply
2.2k
views
Help needed! What wrong with VariantAnnotation and TCGA vcfs
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 12.0 years ago by 25k • written 12.0 years ago by ▴ 340
50 results • Page 1 of 1
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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
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Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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