Showing : gene symbol • reset
1
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4
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DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
5.2 years ago jason.williams ▴ 10
0
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3
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2.5k
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DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 10
1
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2
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1.1k
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Obtain GRanges object by gene names
GRanges gene symbol IdeoViz
6.3 years ago Arman Shahrisa ▴ 20
0
votes
3
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2.0k
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DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
6.7 years ago 574233829 • 0
0
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3
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1.7k
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Choosing most accurate gene symbol from multiple gene symbols
transcript_id gene symbol
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 30
2
votes
4
replies
14k
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biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 9.6 years ago by ▴ 760 • written 9.8 years ago by ▴ 30
0
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2
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4.1k
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Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ▴ 130
3
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3
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3.3k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart homo.sapiens genome regions gene symbol
updated 9.8 years ago by 16k • written 9.8 years ago by ▴ 60
27
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21
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25k
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Mapping genome regions to gene symbols
tcga cnv gene symbol coordinate
updated 2.3 years ago by 68k • written 9.9 years ago by ▴ 60
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3
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3.0k
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filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
10.0 years ago alakatos ▴ 130
10 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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