Bioconductor Gene symbol

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3.3k

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deseq2 dataframe ensembl gene id gene symbol entrezid

5.1 years ago jason.williams ▴ 10

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2.4k

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deseq2 gene symbol ensembl

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by thkapell ▴ 10

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1.1k

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GRanges gene symbol IdeoViz

6.2 years ago Arman Shahrisa ▴ 20

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1.9k

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dmrcate gene symbol coordinate

6.6 years ago 574233829 • 0

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1.7k

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transcript_id gene symbol

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Jo ▴ 30

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14k

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biomart gene symbol

updated 9.6 years ago by Diego Diez ▴ 760 • written 9.7 years ago by chang02_23 ▴ 30

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4.0k

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Pathview KEGG annotation gene symbol visualization

updated 9.6 years ago by Luo Weijun ★ 1.6k • written 9.6 years ago by alakatos ▴ 130

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3.3k

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biomart homo.sapiens genome regions gene symbol

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by NS ▴ 60

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25k

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tcga cnv gene symbol coordinate

updated 2.2 years ago by James W. MacDonald 67k • written 9.8 years ago by NS ▴ 60

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3.0k

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probe filter subset gene symbol affy

9.9 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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