Bioconductor Gene symbol

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deseq2 dataframe ensembl gene id gene symbol entrezid

5.0 years ago jason.williams ▴ 10

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2.4k

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deseq2 gene symbol ensembl

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by thkapell ▴ 10

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1.1k

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GRanges gene symbol IdeoViz

6.1 years ago Arman Shahrisa ▴ 20

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1.9k

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dmrcate gene symbol coordinate

6.5 years ago 574233829 • 0

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1.7k

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transcript_id gene symbol

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Jo ▴ 30

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14k

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biomart gene symbol

updated 9.5 years ago by Diego Diez ▴ 760 • written 9.6 years ago by chang02_23 ▴ 30

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3.9k

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Pathview KEGG annotation gene symbol visualization

updated 9.5 years ago by Luo Weijun ★ 1.6k • written 9.6 years ago by alakatos ▴ 130

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3.3k

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biomart homo.sapiens genome regions gene symbol

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by NS ▴ 60

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24k

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tcga cnv gene symbol coordinate

updated 2.1 years ago by James W. MacDonald 67k • written 9.7 years ago by NS ▴ 60

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3.0k

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probe filter subset gene symbol affy

9.8 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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