Showing : flowcytometry • reset
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Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
8 weeks ago vpochic • 0
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673
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
14 months ago info ▴ 10
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652
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Merging 2 staining panels
FlowCytometry flowCore
2.0 years ago michaela.gregorova13 • 0
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1
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1.3k
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.3 years ago aguirre ▴ 20
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791
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.3 years ago Dennis.hinkel • 0
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1
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1.0k
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 2.4 years ago by ★ 4.0k • written 2.4 years ago by • 0
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707
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
2.4 years ago Noël • 0
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9
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2.3k
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Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.4 years ago by ▴ 360 • written 2.4 years ago by • 0
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787
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Reducing/sampling number of FCS events
FlowCytometry flowCore
3.2 years ago markkelly1983 ▴ 20
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906
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Job: Bioconductor developer
FlowCytometry flowCore
3.2 years ago markkelly1983 ▴ 20
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1
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1.3k
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[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.9 years ago fabrizio.benedetti.82 • 0
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6
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2.5k
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 7.1 years ago by • 0 • written 9.0 years ago by • 0
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1
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1.3k
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[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by • 0
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1
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1.4k
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Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
8.1 years ago mo • 0
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2
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2.3k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.9 years ago Jiang, Mike ★ 1.3k
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1
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2.1k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
9.0 years ago Jiang, Mike ★ 1.3k
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1
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1.4k
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FlowViz package question
flowviz flowcytometry
9.0 years ago Jiang, Mike ★ 1.3k
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1
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1.6k
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read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
9.0 years ago e.bestion • 0
1
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2
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1.5k
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openCyto - samples with low cell counts
flowcytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
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1
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1.5k
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samples are reordered in read.flowSet
flowcore flowcytometry
9.6 years ago Jiang, Mike ★ 1.3k
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2
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2.2k
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xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 9.6 years ago by ★ 1.3k • written 9.6 years ago by • 0
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0
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1.5k
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Re: FlowStats help
flowclust opencyto flowcytometry
10.0 years ago Jiang, Mike ★ 1.3k
1
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1
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1.8k
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flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 10.2 years ago by ★ 1.3k • written 10.3 years ago by ▴ 10
4
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1
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1.9k
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
10.5 years ago Greg Finak ▴ 150
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0
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1.4k
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FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
12.1 years ago Pieter Coussement ▴ 30
25 results • Page 1 of 1
Recent ...
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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
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