Bioconductor Export

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1.2k

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bsgenome biocgenerics bsapply export

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by ረ • 0

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replies

6.0k

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msaprettyprint() msa multiplealignment export

updated 6.8 years ago by UBod ▴ 300 • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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iranges ifelse package namespace export

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by dalibor.miklik • 0

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2.4k

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genomicranges rtracklayer gtf gff export

7.4 years ago rubi ▴ 110

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8.0k

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doParallel foreach export Tutorial

7.8 years ago solo7773 ▴ 10

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1.5k

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rtracklayer export

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by Aaron Lun ★ 28k

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2.0k

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blast annotate biostrings export fasta

10.0 years ago b.stielow • 0

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3.3k

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limma export log2 data agilent

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by Jahn Davik ▴ 110

8 results • Page 1 of 1

Recent ...

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.6k

Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20