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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
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James W. MacDonald
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How you analyze your data is up to you. But do note that Subset * Conditions implies that you want to find genes that respond to stimulus d…
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Hi Matthias,
Happy new year! I wondered if it is possible to retrieve normalized value from each samples? makeTable seems only return beta…
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Hi, James. I forgot to mention, but yes, I did run `DESeq2::DESeq()`. So, I ran `DESeq2::DESeqDataSetFromHTSeqCount`, then `DESeq2::DESeq()…
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ATpoint
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It's an FAQ in the vignette: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-s…
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