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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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19 months ago Maria Doyle ▴ 90
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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19 months ago Maria Doyle ▴ 90
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News: Translation Hackathon (community event) announcement
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.8 years ago shepherl 4.1k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.8 years ago shepherl 4.1k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.8 years ago shepherl 4.1k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables by ATpoint ★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k
The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
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Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
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