Showing : epigenetics • reset
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
8 weeks ago a.alkema • 0
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
4 months ago xiaolong • 0
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4
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867
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limma with interaction term
R biostatistics limma Epigenetics
14 months ago • updated 13 months ago Jitendra ▴ 10
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5
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error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 17 months ago by 68k • written 17 months ago by ▴ 10
3
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
18 months ago Jitendra ▴ 10
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Further analysis after limma regression output
statistics Epigenetics limma
updated 18 months ago by 68k • written 18 months ago by ▴ 10
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
2.1 years ago Jitendra ▴ 10
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847
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How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
2.1 years ago Jitendra ▴ 10
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3
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1.8k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 10
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659
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rnbeads inference
epigenetics RnBeads
2.2 years ago Jitendra ▴ 10
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0
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897
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.4 years ago whduke • 0
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0
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1.1k
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Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
2.5 years ago sudhir.thakurela • 0
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
2.8 years ago xubeisi • 0
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6
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1.8k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.9 years ago Jitendra ▴ 10
0
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0
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778
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
3.0 years ago Jitendra ▴ 10
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0
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973
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
0
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8
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2.4k
views
error in RnBeads installation
Epigenetics RnBeads R
3.1 years ago • updated 3.0 years ago Jitendra ▴ 10
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2
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2.5k
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 20
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
5.1 years ago Shamith.Samarajiwa ▴ 180
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
6.1 years ago firestar ▴ 20
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1.0k
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
6.1 years ago firestar ▴ 20
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1.4k
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
7.7 years ago mattia pelizzola ▴ 200
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1
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2.0k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.1 years ago by ▴ 60 • written 8.2 years ago by ▴ 120
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1
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1.9k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
8.4 years ago • updated 8.2 years ago Yuan Tian ▴ 90
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
8.5 years ago Yuan Tian ▴ 90
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0
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3.0k
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
9.0 years ago asharm37 • 0
1
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0
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1.9k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
9.4 years ago Yassen Assenov ▴ 10
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1.9k
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ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
9.5 years ago jdangelo • 0
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1.7k
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.9 years ago Brian Herb ▴ 80
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
11.3 years ago Holger Klein ▴ 20
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1.6k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.1 years ago stefano iacus ▴ 430
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
13.1 years ago Guest User ★ 13k
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1.6k
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 30
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1.6k
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
13.6 years ago Martin Zenke ▴ 10
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2.0k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
13.6 years ago mattia pelizzola ▴ 200
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
13.6 years ago stefano iacus ▴ 430
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1.5k
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
13.7 years ago Qiong Lin ▴ 10
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 13.9 years ago by ▴ 320 • written 13.9 years ago by ▴ 260
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
15.5 years ago qPCR Platform - the reference in real-t… ▴ 170
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2
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2.5k
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pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ★ 1.1k
0
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
15.8 years ago Joern Toedling ▴ 450
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1.4k
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
16.0 years ago Vincent Detours ▴ 80
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
16.2 years ago Michael Lawrence ▴ 620
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1.5k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
16.3 years ago Dick Beyer ★ 1.4k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.4 years ago by ▴ 140 • written 16.4 years ago by 68k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
16.7 years ago Martin Morgan 25k
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1.4k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
16.7 years ago steffen@stat.Berkeley.EDU ▴ 600
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
16.7 years ago steffen@stat.Berkeley.EDU ▴ 600
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2.0k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.9 years ago Julian Lee ▴ 140
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1.9k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.2 years ago Jean Yee Hwa Yang ▴ 130
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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