Showing : epigenetics • reset
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
27 days ago a.alkema • 0
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
3 months ago xiaolong • 0
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4
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827
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limma with interaction term
R biostatistics limma Epigenetics
12 months ago Jitendra ▴ 10
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5
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1.0k
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 16 months ago by 68k • written 16 months ago by ▴ 10
3
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4
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1.5k
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
17 months ago Jitendra ▴ 10
1
vote
1
reply
593
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 17 months ago by 68k • written 17 months ago by ▴ 10
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708
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
23 months ago Jitendra ▴ 10
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0
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823
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How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
2.0 years ago Jitendra ▴ 10
0
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3
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1.7k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 2.0 years ago by ▴ 760 • written 2.0 years ago by ▴ 10
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0
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647
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rnbeads inference
epigenetics RnBeads
2.1 years ago Jitendra ▴ 10
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0
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887
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.3 years ago whduke • 0
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0
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1.1k
views
Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
2.4 years ago sudhir.thakurela • 0
0
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0
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1.1k
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
2.7 years ago xubeisi • 0
0
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6
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1.7k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.8 years ago Jitendra ▴ 10
0
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0
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766
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.9 years ago Jitendra ▴ 10
0
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0
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957
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.9 years ago Jitendra ▴ 10
0
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8
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2.4k
views
error in RnBeads installation
Epigenetics RnBeads R
3.0 years ago • updated 2.9 years ago Jitendra ▴ 10
0
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2
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2.4k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 4.3 years ago by 52k • written 4.3 years ago by ▴ 20
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
5.0 years ago Shamith.Samarajiwa ▴ 180
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1.4k
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
6.0 years ago firestar ▴ 20
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0
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998
views
Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
6.0 years ago firestar ▴ 20
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0
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1.4k
views
Job: PhD computational position - Milan
epigenetics transcription computational biology Job
7.6 years ago mattia pelizzola ▴ 200
0
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1
reply
2.0k
views
Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.0 years ago by ▴ 60 • written 8.1 years ago by ▴ 120
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1
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1.9k
views
News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
8.3 years ago • updated 8.1 years ago Yuan Tian ▴ 90
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1.7k
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
8.4 years ago Yuan Tian ▴ 90
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0
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3.0k
views
Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
9.0 years ago asharm37 • 0
1
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0
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1.9k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
9.3 years ago Yassen Assenov ▴ 10
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1.9k
views
ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
9.4 years ago jdangelo • 0
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1.7k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.9 years ago Brian Herb ▴ 80
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2.1k
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
11.2 years ago Holger Klein ▴ 20
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1.6k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.0 years ago stefano iacus ▴ 430
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1.6k
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
13.1 years ago Guest User ★ 13k
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3
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1.5k
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 30
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1.5k
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
13.5 years ago Martin Zenke ▴ 10
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2.0k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
13.5 years ago mattia pelizzola ▴ 200
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1.7k
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
13.5 years ago stefano iacus ▴ 430
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0
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1.4k
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
13.6 years ago Qiong Lin ▴ 10
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3
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3.0k
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 13.8 years ago by ▴ 320 • written 13.8 years ago by ▴ 260
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
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2
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2.5k
views
pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ★ 1.1k
0
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
15.7 years ago Joern Toedling ▴ 450
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0
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1.4k
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.9 years ago Vincent Detours ▴ 80
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1.2k
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
16.1 years ago Michael Lawrence ▴ 620
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1.5k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
16.2 years ago Dick Beyer ★ 1.4k
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1.5k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.3 years ago by ▴ 140 • written 16.3 years ago by 68k
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1.5k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
16.6 years ago Martin Morgan 25k
0
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1
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1.4k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
16.7 years ago • updated 16.6 years ago steffen@stat.Berkeley.EDU ▴ 600
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
16.7 years ago steffen@stat.Berkeley.EDU ▴ 600
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2.0k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.8 years ago Julian Lee ▴ 140
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0
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1.8k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.1 years ago Jean Yee Hwa Yang ▴ 130
50 results • Page 1 of 1
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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