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epigenetics
•
reset
0
votes
2
replies
347
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis
Normalization
Epigenetics
MethylationArrayData
11 weeks ago
a.alkema
• 0
0
votes
0
replies
280
views
Job:
Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging
Epigenetics
JobPosting
Postdoctor
Cancer
5 months ago
xiaolong
• 0
0
votes
4
replies
884
views
limma with interaction term
R
biostatistics
limma
Epigenetics
14 months ago
Jitendra
▴ 10
0
votes
5
replies
1.1k
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Jitendra
▴ 10
3
votes
4
replies
1.6k
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
19 months ago
Jitendra
▴ 10
1
vote
1
reply
620
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Jitendra
▴ 10
0
votes
0
replies
735
views
combat for batch effect correction in EPIC array data
Epigenetics
combat
EPIC
2.1 years ago
Jitendra
▴ 10
0
votes
0
replies
866
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
2.2 years ago
Jitendra
▴ 10
0
votes
3
replies
1.8k
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 2.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.2 years ago by
Jitendra
▴ 10
0
votes
0
replies
669
views
rnbeads inference
epigenetics
RnBeads
2.2 years ago
Jitendra
▴ 10
0
votes
0
replies
909
views
Job:
EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq
Transcriptomics
Pathways
Epigenetics
RNASeq
2.4 years ago
whduke
• 0
0
votes
0
replies
1.2k
views
Job:
Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation
SingleCell
Autism
Neurogenesis
Epigenetics
2.5 years ago
sudhir.thakurela
• 0
0
votes
0
replies
1.1k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
2.9 years ago
xubeisi
• 0
0
votes
6
replies
1.8k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
2.9 years ago
Jitendra
▴ 10
0
votes
0
replies
788
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
3.1 years ago
Jitendra
▴ 10
0
votes
0
replies
982
views
filtering options in RnBeads for array data
Epigenetics
RnBeads
MethylationArrayData
methylationArrayAnalysis
3.1 years ago
Jitendra
▴ 10
0
votes
8
replies
2.5k
views
error in RnBeads installation
Epigenetics
RnBeads
R
3.1 years ago
Jitendra
▴ 10
0
votes
2
replies
2.6k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 4.4 years ago by
Gordon Smyth
52k • written 4.4 years ago by
Jeff
▴ 20
0
votes
0
replies
1.3k
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
5.2 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.4k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
6.1 years ago
firestar
▴ 20
0
votes
0
replies
1.0k
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
6.1 years ago
firestar
▴ 20
0
votes
0
replies
1.4k
views
Job:
PhD computational position - Milan
epigenetics
transcription
computational biology
Job
7.8 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
2.0k
views
Epigenetic clock (Horvath): package?
methylation
illimina 450k methylation
epigenetics
minfi
updated 8.1 years ago by
Wade Davis
▴ 60 • written 8.2 years ago by
Brian Smith
▴ 120
0
votes
1
reply
1.9k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
8.5 years ago • updated 8.3 years ago
Yuan Tian
▴ 90
0
votes
0
replies
1.7k
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
8.6 years ago
Yuan Tian
▴ 90
0
votes
0
replies
3.1k
views
Job:
Bioinformatics Scientist position at Johns Hopkins
R
USA
Hopkins
GI Cancer
Epigenetics
Job
9.1 years ago
asharm37
• 0
1
vote
0
replies
2.0k
views
Job:
Post-doc Position in Epigenetic Bioinformatics
cancer
sequencing
epigenetics
computational biology
bioinformatics
Job
9.4 years ago
Yassen Assenov
▴ 10
0
votes
0
replies
1.9k
views
ChAMP: Error using champ.norm() function
ChAMP
methylation
epigenetics
9.5 years ago
jdangelo
• 0
0
votes
0
replies
1.8k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing
Epigenetics
PROcess
Sequencing
Epigenetics
PROcess
11.0 years ago
Brian Herb
▴ 80
0
votes
0
replies
2.1k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
11.3 years ago
Holger Klein
▴ 20
0
votes
0
replies
1.6k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
12.2 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.6k
views
IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics
Annotation
Network
Epigenetics
Annotation
Network
13.2 years ago
Guest User
★ 13k
0
votes
3
replies
1.6k
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics
cdf
Epigenetics
cdf
updated 13.4 years ago by
James W. MacDonald
68k • written 13.4 years ago by
Nicholas Wong
▴ 30
0
votes
0
replies
1.6k
views
Position Assistant Professor Bioinformatics
Epigenetics
Epigenetics
13.6 years ago
Martin Zenke
▴ 10
0
votes
0
replies
2.0k
views
4 PhD positions in cancer computational biology
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
13.7 years ago
mattia pelizzola
▴ 200
0
votes
0
replies
1.7k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
13.7 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.5k
views
Head of Junior Research Group - Bioinformatics
Epigenetics
Epigenetics
13.7 years ago
Qiong Lin
▴ 10
0
votes
3
replies
3.1k
views
edgeR - multiple comparisions
Epigenetics
GO
edgeR
Epigenetics
GO
edgeR
updated 13.9 years ago by
Sridhara Gupta Kunjeti
▴ 320 • written 13.9 years ago by
Davis McCarthy
▴ 260
0
votes
0
replies
2.1k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
15.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
2
replies
2.5k
views
pd.hugene.1.0.st.v1
Epigenetics
Annotation
oligo
Epigenetics
Annotation
oligo
updated 15.7 years ago by
Benilton Carvalho
★ 4.3k • written 15.7 years ago by
Mark Robinson
★ 1.1k
0
votes
0
replies
1.9k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
15.8 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.4k
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
16.1 years ago
Vincent Detours
▴ 80
0
votes
0
replies
1.2k
views
browseGenome width question (rtracklayer)
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
16.2 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
1.5k
views
sd==0 for some probesets when using gcrma
Microarray
Proteomics
Epigenetics
Normalization
GO
Cancer
hgu95av2
affy
graph
gcrma
GO
16.4 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 16.4 years ago by
dorothyc
▴ 140 • written 16.4 years ago by
James W. MacDonald
68k
0
votes
0
replies
1.5k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics
Cancer
probe
affy
xps
Epigenetics
Cancer
probe
affy
xps
16.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.4k
views
Fwd: biomaRt column order
Epigenetics
biomaRt
Epigenetics
biomaRt
16.8 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
1.1k
views
[ Re: Fwd: biomaRt column order]
Epigenetics
biomaRt
Epigenetics
biomaRt
16.8 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
2.0k
views
Bioinformatics Positions, National Cancer Centre Singapore
Microarray
Epigenetics
Cancer
Microarray
Epigenetics
Cancer
17.0 years ago
Julian Lee
▴ 140
0
votes
0
replies
1.9k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics
Bayesian
Cancer
Breast
Epigenetics
Bayesian
Cancer
Breast
17.3 years ago
Jean Yee Hwa Yang
▴ 130
50 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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