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methylationEPIC
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0
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1.1k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.3 years ago
rmf
▴ 20
0
votes
0
replies
849
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.3 years ago
rmf
▴ 20
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.2 years ago
david.ch
• 0
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.3 years ago
gabrielrfries
• 0
0
votes
1
reply
2.0k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.4 years ago by
Yuan Tian
▴ 290 • written 6.4 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.7 years ago by
rcavalca
▴ 140 • written 6.7 years ago by
karthikrpad
▴ 10
0
votes
0
replies
916
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.9 years ago
Ellen O
• 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.1 years ago by
Guido Hooiveld
★ 4.0k • written 7.1 years ago by
Ellen O
• 0
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.3 years ago
nhejazi
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.3 years ago
chelsey.ju
• 0
0
votes
3
replies
1.7k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.4 years ago
annabelle.congras
▴ 10
11 results • Page
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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Votes
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
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