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Comment: DESeq2 analysis with transcript counts
by
kahunroleh
•
0
Thanks for sharing the solution. I also face this problem.
[nulls][1]
[1]: https://nulls-brawl-apk.fr/
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
kahunroleh
•
0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Martijn
•
0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
•
0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
by
James W. MacDonald
67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
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