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Comment: How do I fix an odd voom plot in a combined dataset?
by
1sunmic2
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Thanks for responding! I did change the code slightly:
dge1 <- DGEList(counts = combined_data_counts)
keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
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Andre
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The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1).
If I use estimateGLMRobustDisp(), like…
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Here, estimateGLMRobustDisp() was used just to get the diagnostic BCV plot by plotBCV(y). The robust NB dispersions were not used for the D…
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