Showing : enrichment • reset
1
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GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment GSVA ssGSEA
updated 5 months ago by ▴ 10 • written 6 months ago by ▴ 10
0
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0
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701
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
24 months ago Priya • 0
0
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4
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1.9k
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Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 2.3 years ago by ★ 4.1k • written 2.5 years ago by • 0
0
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0
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712
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
2.8 years ago María José • 0
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2
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1.2k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.8 years ago by ★ 1.4k • written 2.8 years ago by • 0
1
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3
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2.7k
views
enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 13 months ago by • 0 • written 2.8 years ago by • 0
1
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3
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9.2k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.0 years ago by ★ 3.4k • written 3.0 years ago by • 0
0
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0
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823
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
3.5 years ago Mark Dunning ★ 1.1k
2
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2
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1.1k
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
3.9 years ago josmantorres ▴ 10
0
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7
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3.9k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 20
4
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4
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1.8k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.6 years ago by 52k • written 4.6 years ago by ▴ 120
1
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2
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12k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.7 years ago by ★ 1.3k • written 4.7 years ago by • 0
0
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0
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1.0k
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reactomePA error input file
r reactomePA enrichment
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by ▴ 10
3
votes
3
replies
6.8k
views
Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 22 months ago by ★ 4.1k • written 5.0 years ago by • 0
5
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7
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3.1k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
2
votes
1
reply
1.9k
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
5.1 years ago harelarik ▴ 60
3
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3
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1.6k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
1
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1
reply
1.4k
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
6.2 years ago David ROUX ▴ 20
2
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3
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1.3k
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 40
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0
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1.1k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.6 years ago zhu • 0
0
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0
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1.4k
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
8.5 years ago enricoferrero ▴ 680
1
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2
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2.7k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 10.1 years ago by ▴ 40 • written 10.1 years ago by ▴ 10
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0
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1.9k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.4 years ago Guangchuang Yu ★ 1.2k
23 results • Page 1 of 1
Recent ...
Replies
Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
Votes
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
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