Showing : enrichment • reset
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4
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GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment GSVA ssGSEA
updated 4 months ago by ▴ 10 • written 5 months ago by ▴ 10
0
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0
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675
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
23 months ago Priya • 0
0
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4
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1.8k
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Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 2.3 years ago by ★ 4.1k • written 2.4 years ago by • 0
0
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0
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705
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
2.7 years ago María José • 0
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2
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1.2k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.7 years ago by ★ 1.4k • written 2.7 years ago by • 0
1
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3
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2.7k
views
enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 12 months ago by • 0 • written 2.8 years ago by • 0
1
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3
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8.8k
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GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.9 years ago by ★ 3.4k • written 2.9 years ago by • 0
0
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0
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813
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
3.4 years ago Mark Dunning ★ 1.1k
2
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2
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1.1k
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
3.8 years ago josmantorres ▴ 10
0
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7
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3.7k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.3 years ago by 52k • written 4.3 years ago by ▴ 20
4
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4
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1.7k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 120
1
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2
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12k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.6 years ago by ★ 1.3k • written 4.6 years ago by • 0
0
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0
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992
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reactomePA error input file
r reactomePA enrichment
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
3
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3
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6.6k
views
Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 21 months ago by ★ 4.1k • written 4.9 years ago by • 0
5
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7
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2.9k
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Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 4.9 years ago by 52k • written 4.9 years ago by ▴ 60
2
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1
reply
1.8k
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
5.0 years ago harelarik ▴ 60
3
votes
3
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1.6k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
1
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1
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1.3k
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
6.1 years ago David ROUX ▴ 20
2
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3
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1.3k
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 40
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0
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1.1k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.6 years ago zhu • 0
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0
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1.4k
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
8.4 years ago enricoferrero ▴ 680
1
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2
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2.6k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 10.0 years ago by ▴ 40 • written 10.0 years ago by ▴ 10
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0
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1.9k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.3 years ago Guangchuang Yu ★ 1.2k
23 results • Page 1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Comment: orgDB by jenniferping36 • 0
Thanks for the suggestion! I'll check out the resources.
Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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