Showing : dmrcate • reset
0
votes
1
reply
79
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl DMRcate
updated 12 days ago by 67k • written 13 days ago by • 0
0
votes
1
reply
1.3k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 18 days ago by • 0 • written 3.1 years ago by ▴ 50
2
votes
4
replies
457
views
Can we get beta values with DMRcate package
DMRcatedata DMRcate
6 weeks ago • updated 5 weeks ago Melisa Tecik • 0
0
votes
5
replies
439
views
how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
minfi DMRcate
6 weeks ago • updated 4 weeks ago xiaofeiwang198266 • 0
1
vote
2
replies
229
views
Limma Interaction Effect with Covariates
limma DMRcate
8 weeks ago kitzhu • 0
0
votes
0
replies
209
views
DMRcate pcutoff setting
EpicV2 DMRcate
3 months ago kitzhu • 0
3
votes
12
replies
4.0k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 5 months ago by ▴ 200 • written 14 months ago by ▴ 10
3
votes
2
replies
810
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 7 months ago by 52k • written 8 months ago by • 0
1
vote
2
replies
1.7k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 9 months ago by ▴ 200 • written 23 months ago by ▴ 10
0
votes
0
replies
371
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
9 months ago Macsue • 0
1
vote
2
replies
1.9k
views
EPIC array hg38 annotation?
minfi DMRcate
11 months ago mycetes • 0
0
votes
0
replies
358
views
What is the significance of DMR in DMRcate
DMRcate
11 months ago chuanjiao6 • 0
3
votes
2
replies
517
views
Question about DMRcate
DMRcate dmrcate
11 months ago chuanjiao6 • 0
8
votes
7
replies
1.9k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 13 months ago by ▴ 30
0
votes
5
replies
953
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 15 months ago by 67k • written 15 months ago by ▴ 10
0
votes
1
reply
1.0k
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 15 months ago by 4.1k • written 15 months ago by • 0
3
votes
4
replies
1.4k
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
16 months ago Jitendra ▴ 10
0
votes
1
reply
801
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 17 months ago by ▴ 200 • written 17 months ago by • 0
2
votes
6
replies
1.5k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 21 months ago by ▴ 200 • written 21 months ago by • 0
6
votes
12
replies
2.4k
views
Error when loading DMRcate
DMRcate
23 months ago Bazingastats • 0
0
votes
0
replies
919
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
23 months ago gilliangoobie • 0
2
votes
6
replies
2.3k
views
DMRcate
DMRcate R DMRcatedata Markdown
23 months ago yr542 • 0
0
votes
1
reply
1.2k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.2 years ago by 67k • written 3.2 years ago by ▴ 30
0
votes
2
replies
1.4k
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
3.3 years ago xie186 • 0
0
votes
6
replies
1.6k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.5 years ago by ▴ 20 • written 4.5 years ago by ▴ 10
1
vote
2
replies
1.8k
views
DMRcate extractRanges error
DMRcate
3.9 years ago macsue.jacques ▴ 10
0
votes
0
replies
930
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.2 years ago Mike ▴ 10
3
votes
4
replies
1.4k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 4.3 years ago by ▴ 200 • written 4.3 years ago by ▴ 10
0
votes
2
replies
968
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
4.5 years ago zh9118 • 0
4
votes
9
replies
3.6k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 3.2 years ago by ▴ 30 • written 4.6 years ago by ▴ 10
1
vote
8
replies
2.5k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.7 years ago by ▴ 200 • written 4.7 years ago by ▴ 40
3
votes
5
replies
1.7k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 5.3 years ago by 67k • written 5.3 years ago by ▴ 10
0
votes
3
replies
2.1k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 5.4 years ago by ▴ 200 • written 5.4 years ago by • 0
0
votes
2
replies
1.5k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 5.5 years ago by ▴ 290 • written 5.5 years ago by • 0
1
vote
3
replies
1.5k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.6 years ago by 67k • written 5.6 years ago by ▴ 10
2
votes
18
replies
5.7k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 6.5 years ago by • 0 • written 8.6 years ago by ▴ 160
0
votes
3
replies
1.9k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
6.5 years ago 574233829 • 0
2
votes
6
replies
2.3k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.7 years ago by ▴ 200 • written 6.7 years ago by • 0
0
votes
3
replies
2.2k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 7.6 years ago by ▴ 90 • written 7.6 years ago by • 0
1
vote
2
replies
1.8k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.6 years ago by ▴ 200 • written 7.6 years ago by • 0
1
vote
3
replies
1.7k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 10
0
votes
11
replies
4.6k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 11 months ago by ▴ 200 • written 7.8 years ago by ★ 2.0k
1
vote
10
replies
3.5k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.8 years ago by ▴ 200 • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.7k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 8.0 years ago by ▴ 200 • written 8.0 years ago by ▴ 10
0
votes
2
replies
1.7k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 8.0 years ago by ▴ 200 • written 8.0 years ago by • 0
1
vote
2
replies
1.4k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 8.0 years ago by ▴ 200 • written 8.0 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 8.0 years ago by ▴ 200 • written 8.0 years ago by • 0
0
votes
9
replies
20k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 8.1 years ago by ▴ 200 • written 8.2 years ago by • 0
1
vote
15
replies
2.7k
views
DMRcate results meanpvals
dmrcate
updated 8.5 years ago by ▴ 200 • written 8.6 years ago by ▴ 160
0
votes
1
reply
1.1k
views
conflicts in chromosome number
DMRcate
updated 8.6 years ago by ▴ 200 • written 8.6 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Problems with oarfish + tximport + swish by Im • 0
Office ta kemon
Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Comment: EdgeR Biological CVs by Joseph ▴ 10
I believe the published study provides answers to your questions. Yunshun Chen and Pedro Baldoni's recent papers on edgeR may also be of in…
Answer: EdgeR Biological CVs by Gordon Smyth 52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
Votes
Answer: EdgeR Biological CVs
Comment: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Awards • All
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Gordon Smyth 52k
Popular Question to Bob ▴ 10
Popular Question to shepherl 4.1k
Scholar to James W. MacDonald 67k
Locations • All
Germany, 4 minutes ago
The Netherlands, 32 minutes ago
UPF, Barcelona, Spain, 53 minutes ago
Germany, 1 hour ago
India, 1 hour ago
Traffic: 888 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6