Bioconductor Dmr

Showing : dmr • reset

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2.2k

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DMR Methylation R Gviz

updated 15 months ago by Robert Ivanek ▴ 750 • written 3.8 years ago by ltzhou • 0

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936

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edgeR DMR

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by Fiona • 0

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2.9k

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dmr MethylationArrayData DMRcatedata

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by Julie • 0

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964

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Biseq Methylation DMP DMR RRBS

4.6 years ago i.s.castanho • 0

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930

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BiSeq testClusters error dmr

4.7 years ago akhaira • 0

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1.8k

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BiSeq DMR

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by akhaira • 0

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1.1k

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ChAMP DMR

updated 4.8 years ago by Yuan Tian ▴ 290 • written 4.8 years ago by olive8306 • 0

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1.2k

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bumphunter DMR methylation minfi

5.1 years ago i.s.brorson • 0

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1.1k

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DMR bumphunter EPIC chip

5.1 years ago i.s.brorson • 0

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2.0k

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ChAMP DMR champ.DMR

6.4 years ago yuabrahamliu • 0

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885

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methylsig no replicates dmr

6.6 years ago nilaycan • 0

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1.8k

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bumphunter DMR doparallel multicore

updated 20 months ago by Alessandro • 0 • written 6.8 years ago by arce.domingo.1407 • 0

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1.8k

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dmrseq dmr dmrs bisulfite methylation

updated 7.0 years ago by keegan ▴ 60 • written 7.1 years ago by l.kremer • 0

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1.5k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Ellen O • 0

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1.8k

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dmrcate dmr analysis dmr

updated 8.1 years ago by Tim Peters ▴ 230 • written 8.1 years ago by alexandria.andrayas ▴ 10

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4.9k

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bumphunter DMR DMR analysis minfi bioconductor

updated 8.2 years ago by rafa ▴ 60 • written 8.2 years ago by chelsey.ju • 0

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4.3k

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bsseq dmr ttest pvalue

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by enricoferrero ▴ 680

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1.9k

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methylation linear model dmr bsseq biseq

9.3 years ago enricoferrero ▴ 680

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2.9k

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dmr methylation deseq2 bsseq biseq

updated 9.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.4 years ago by enricoferrero ▴ 680

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1.5k

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ChAMP minfi DMR dmr analysis lasso

9.4 years ago AST ▴ 60

20 results • Page 1 of 1

Recent ...

Replies

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760