Showing : Biseq • reset
0
votes
1
reply
663
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
2.3 years ago thomas.koefoed • 0
0
votes
0
replies
771
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
3.9 years ago i.s.castanho • 0
0
votes
1
reply
953
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
3.9 years ago akhaira • 0
0
votes
1
reply
754
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
3.9 years ago akhaira • 0
2
votes
8
replies
964
views
Reason for NA in table after beta regression?
biseq beta regression
4.0 years ago • updated 3.9 years ago akhaira • 0
0
votes
0
replies
487
views
What values to include for predictedMethNull in BiSeq
Biseq
4.0 years ago akhaira • 0
2
votes
10
replies
1.3k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
1
vote
0
replies
594
views
Understanding ColData in BiSeq
BiSeq Coldata
4.0 years ago akhaira • 0
0
votes
1
reply
663
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
4.1 years ago AishaD • 0
0
votes
1
reply
628
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
4.2 years ago i.s.castanho • 0
0
votes
0
replies
758
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
5.4 years ago mira • 0
0
votes
1
reply
985
views
Biseq installation error
biseq package installation r
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
0
replies
934
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
5.8 years ago spr ▴ 10
0
votes
1
reply
1.1k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 6.5 years ago by 51k • written 6.5 years ago by • 0
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
7.2 years ago l.eijssen • 0
0
votes
3
replies
1.3k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
0
votes
6
replies
1.9k
views
BiSeq trimClusters error
biseq error trimClusters
updated 8.3 years ago by ▴ 130 • written 8.4 years ago by • 0
1
vote
0
replies
1.7k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
8.5 years ago enricoferrero ▴ 660
4
votes
4
replies
1.9k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 8.6 years ago by 66k • written 8.6 years ago by ▴ 460
1
vote
2
replies
2.6k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 8.6 years ago by ★ 6.5k • written 8.6 years ago by ▴ 660
2
votes
15
replies
3.1k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
9.2 years ago • updated 9.1 years ago mnaymik ▴ 10
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
9.1 years ago maria.maqueda • 0
0
votes
3
replies
1.7k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 10.4 years ago by ▴ 130 • written 10.4 years ago by ▴ 330
23 results • Page 1 of 1
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Answer: GESA with certain gene list returns no result with human genom, but many result by James W. MacDonald 66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by vohara4 • 0
"label" refers to my clusters, so there shouldn't be one. Both samples have cells in every cluster
Comment: Installing Bioconductor packages in Docker by Jon Bråte ▴ 250
How do you run your image after this? I need to specify a password...
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by ATpoint ★ 4.2k
What is the relationship between side and label?
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by vohara4 • 0
Thank you so much for your response. I've just tried adding Side to the summed object in both of the following manners, but I still get a "…
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A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
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