Bioconductor Dgelist

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356

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DGEList edgeR

6 months ago prity6459 • 0

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769

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edgeR Bioconductor Dseq2 dgelist

updated 22 months ago by Gordon Smyth 51k • written 22 months ago by Fiona • 0

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1.0k

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factors edgeR setup DGELIst

updated 3.5 years ago by Gordon Smyth 51k • written 3.5 years ago by Alex • 0

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2.0k

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edger DGElist

updated 5.6 years ago by Gordon Smyth 51k • written 5.6 years ago by naser.sadri • 0

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1.9k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.3 years ago by Gordon Smyth 51k • written 6.3 years ago by Kevin • 0

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2.3k

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edgeR summarizedexperiment dgelist

6.6 years ago aljoscha.leusmann • 0

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1.1k

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tree bootstrap dgelist plotmds

6.7 years ago Larry K. • 0

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2.4k

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edger dgelist NA egsea

updated 6.7 years ago by Gordon Smyth 51k • written 6.7 years ago by belmore • 0

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4.0k

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edger DGEList org.hs.eg.db gene annotation

updated 3.1 years ago by IIart.hubII • 0 • written 6.9 years ago by svlachavas ▴ 830

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3.4k

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egder dgelist group rnaseq

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by fawazfebin ▴ 60

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3.6k

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DGElist filter edgeR

updated 7.3 years ago by Gordon Smyth 51k • written 7.3 years ago by alakatos ▴ 130

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2.8k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.2 years ago by Steve Lianoglou ★ 13k • written 8.2 years ago by benedict.ng ▴ 30

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7.0k

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edger subsetting dgelist

updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by mnaymik ▴ 10

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21k

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edgeR row.names DGEList

9.8 years ago • updated 9.7 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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Popular Question to Guido Hooiveld ★ 4.1k