Bioconductor Dgelist

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437

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DGEList edgeR

9 months ago prity6459 • 0

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821

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edgeR Bioconductor Dseq2 dgelist

updated 2.1 years ago by Gordon Smyth 52k • written 2.1 years ago by Fiona • 0

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1.1k

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factors edgeR setup DGELIst

updated 3.7 years ago by Gordon Smyth 52k • written 3.7 years ago by Alex • 0

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2.2k

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edger DGElist

updated 5.8 years ago by Gordon Smyth 52k • written 5.8 years ago by naser.sadri • 0

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2.0k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by Kevin • 0

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2.5k

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edgeR summarizedexperiment dgelist

6.8 years ago aljoscha.leusmann • 0

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1.1k

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tree bootstrap dgelist plotmds

6.9 years ago Larry K. • 0

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2.5k

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edger dgelist NA egsea

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by belmore • 0

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4.1k

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edger DGEList org.hs.eg.db gene annotation

updated 3.4 years ago by IIart.hubII • 0 • written 7.2 years ago by svlachavas ▴ 840

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3.5k

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egder dgelist group rnaseq

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by fawazfebin ▴ 60

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3.7k

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DGElist filter edgeR

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by alakatos ▴ 130

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2.9k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.5 years ago by benedict.ng ▴ 30

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7.2k

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edger subsetting dgelist

updated 8.5 years ago by Gordon Smyth 52k • written 8.6 years ago by mnaymik ▴ 10

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21k

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edgeR row.names DGEList

10.0 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k