Bioconductor Dgelist

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499

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DGEList edgeR

11 months ago prity6459 • 0

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863

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edgeR Bioconductor Dseq2 dgelist

updated 2.3 years ago by Gordon Smyth 52k • written 2.3 years ago by Fiona • 0

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1.2k

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factors edgeR setup DGELIst

updated 3.9 years ago by Gordon Smyth 52k • written 3.9 years ago by Alex • 0

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2.3k

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edger DGElist

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by naser.sadri • 0

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2.0k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by Kevin • 0

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2.6k

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edgeR summarizedexperiment dgelist

7.0 years ago aljoscha.leusmann • 0

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1.2k

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tree bootstrap dgelist plotmds

7.1 years ago Larry K. • 0

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2.6k

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edger dgelist NA egsea

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by belmore • 0

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4.2k

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edger DGEList org.hs.eg.db gene annotation

updated 3.5 years ago by IIart.hubII • 0 • written 7.4 years ago by svlachavas ▴ 840

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3.6k

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egder dgelist group rnaseq

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by fawazfebin ▴ 60

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3.8k

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DGElist filter edgeR

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

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3.0k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by benedict.ng ▴ 30

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7.4k

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edger subsetting dgelist

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by mnaymik ▴ 10

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21k

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edgeR row.names DGEList

10.2 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Comment: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Votes

Having Trouble Using CNE12() and CNE21() in CNEr

Answer: Having Trouble Using CNE12() and CNE21() in CNEr

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

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Popular Question to Ariel Chernomoretz ▴ 170