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dgelist
•
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0
votes
2
replies
465
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
10 months ago
prity6459
• 0
2
votes
2
replies
845
views
Inccorect group number in DGEList
edgeR
Bioconductor
Dseq2
dgelist
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Fiona
• 0
1
vote
1
reply
1.1k
views
Optimal edgeR design for a single-factor experiment
factors
edgeR
setup
DGELIst
updated 3.8 years ago by
Gordon Smyth
52k • written 3.8 years ago by
Alex
• 0
0
votes
2
replies
2.2k
views
create DGElist Object
edger
DGElist
updated 5.9 years ago by
Gordon Smyth
52k • written 5.9 years ago by
naser.sadri
• 0
0
votes
4
replies
2.0k
views
Error in RnaSeqGeneEdgeRQL
dgelist
edger
RnaSeqGeneEdgeRQL
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
Kevin
• 0
1
vote
4
replies
2.6k
views
edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
edgeR
summarizedexperiment
dgelist
6.9 years ago
aljoscha.leusmann
• 0
0
votes
0
replies
1.1k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
7.0 years ago
Larry K.
• 0
0
votes
1
reply
2.6k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 7.0 years ago by
Gordon Smyth
52k • written 7.0 years ago by
belmore
• 0
3
votes
3
replies
4.2k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger
DGEList
org.hs.eg.db
gene annotation
updated 3.5 years ago by
IIart.hubII
• 0 • written 7.3 years ago by
svlachavas
▴ 840
0
votes
2
replies
3.6k
views
Design of 'group' object in DGElist function
egder
dgelist
group
rnaseq
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
fawazfebin
▴ 60
2
votes
4
replies
3.8k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 7.7 years ago by
Gordon Smyth
52k • written 7.7 years ago by
alakatos
▴ 130
4
votes
6
replies
2.9k
views
How to carry out differential gene expression starting with a table of TMM normalised values without access to the raw reads?
edger
raw reads
TMM normalised values
DGEList
differential gene expression
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
benedict.ng
▴ 30
3
votes
7
replies
7.3k
views
edgeR subsetting DGEList by column/sample
edger
subsetting
dgelist
updated 8.6 years ago by
Gordon Smyth
52k • written 8.6 years ago by
mnaymik
▴ 10
1
vote
4
replies
21k
views
edgeR: non-unique values when setting 'row.names' - but the row names are unique!!!
edgeR
row.names
DGEList
10.1 years ago
ccheung
• 0
14 results • Page
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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
• 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table
by
shepherl
4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
shepherl
4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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