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Showing :
designmatrix
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4
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6
replies
1.2k
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Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
17 months ago
Abdul
▴ 20
2
votes
6
replies
1.2k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Keifa
▴ 10
3
votes
5
replies
1.0k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 15 months ago by
Michael Love
42k • written 15 months ago by
aditya.m
▴ 10
2
votes
4
replies
1.3k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
nashchem
• 0
2
votes
4
replies
952
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
3.3 years ago
Debayan
▴ 20
2
votes
4
replies
1.4k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 2.6 years ago by
Gordon Smyth
50k • written 2.6 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
208
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 27 days ago by
Gordon Smyth
50k • written 28 days ago by
prity6459
• 0
0
votes
3
replies
1.1k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 2.6 years ago by
swbarnes2
★ 1.4k • written 2.6 years ago by
OST
• 0
0
votes
2
replies
912
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
3.3 years ago
sfidemw
• 0
1
vote
2
replies
1.1k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
athief
▴ 20
0
votes
2
replies
854
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Beginner
▴ 60
0
votes
2
replies
690
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
anshulmbi
• 0
0
votes
1
reply
185
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 5 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
avery
• 0
1
vote
0
replies
627
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
3.2 years ago
nageshprabhu.k
▴ 10
14 results • Page
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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