Bioconductor Designmatrix

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DESeq2 Designmatrix limma

updated 4 months ago by James W. MacDonald 67k • written 4 months ago by Neha • 0

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subsettingdata edgeR designmatrix

updated 6 months ago by Gordon Smyth 51k • written 6 months ago by prity6459 • 0

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limma designmatrix

updated 7 months ago by Gordon Smyth 51k • written 7 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 21 months ago by Michael Love 42k • written 21 months ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

23 months ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.0 years ago by Gordon Smyth 51k • written 3.1 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 3.1 years ago by swbarnes2 ★ 1.4k • written 3.1 years ago by OST • 0

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designmatrix RNA-seq limma

updated 3.6 years ago by Gordon Smyth 51k • written 3.6 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

3.7 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

3.8 years ago Debayan ▴ 20

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edgeR pairedsamples designmatrix

3.8 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by anshulmbi • 0

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997

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edger r differentialanalysis rnaseq designmatrix

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Beginner ▴ 60

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Limma designMatrix

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by nashchem • 0

15 results • Page 1 of 1

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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

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