Bioconductor Designmatrix

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limma DifferentialExpression Designmatrix

4 months ago Tadeoye ▴ 20

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DESeq2 Designmatrix limma

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by Neha • 0

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766

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subsettingdata edgeR designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by prity6459 • 0

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limma designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.3 years ago by Michael Love 43k • written 2.3 years ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

2.4 years ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.5 years ago by Gordon Smyth 52k • written 3.6 years ago by rebecca.lea.johnston • 0

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1.5k

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designmatrix deseq2 DESeq2

updated 3.5 years ago by swbarnes2 ★ 1.4k • written 3.5 years ago by OST • 0

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designmatrix RNA-seq limma

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.2 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

4.2 years ago Debayan ▴ 20

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1.3k

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edgeR pairedsamples designmatrix

4.2 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Beginner ▴ 60

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1.5k

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Limma designMatrix

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Keifa ▴ 10

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1.6k

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limma microarray designmatrix

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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