20 months ago • updated 10 months ago
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23 months ago • updated 21 months ago
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written 5.9 years ago by
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2.4 years ago • updated 2.3 years ago
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2.8 years ago
pgauthi1
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2.9 years ago • updated 2.4 years ago
shepherl
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3.4 years ago • updated 2.9 years ago
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4.2 years ago • updated 3.8 years ago
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5.0 years ago
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5.2 years ago
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5.3 years ago
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5.4 years ago • updated 5.3 years ago
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5.5 years ago • updated 5.4 years ago
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5.6 years ago • updated 5.5 years ago
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5.7 years ago
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5.8 years ago
shepherl
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Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★
4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
•
0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴
180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05.
My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★
4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
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