Showing : cytoscape • reset
1
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 12 months ago by ▴ 30 • written 13 months ago by ▴ 90
3
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7
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1.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
20 months ago Ortega-C ▴ 10
0
votes
0
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1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
23 months ago gianni.drm • 0
0
votes
1
reply
921
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.1 years ago by ▴ 30 • written 4.5 years ago by • 0
3
votes
4
replies
1.7k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.7 years ago Matthew Thornton ▴ 380
1
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0
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2.1k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.3 years ago lm795 ▴ 10
0
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0
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1.3k
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Help with generating network from gene expression data
gene expression network cytoscape
7.0 years ago torgeirous • 0
6
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8
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9.5k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 7.0 years ago by ▴ 60 • written 7.7 years ago by ▴ 60
0
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1
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1.5k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by • 0
9 results • Page 1 of 1
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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…
Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740
Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs by ATpoint ★ 4.6k
"Joseph" is a spam bot...
Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
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