Showing : cytoscape • reset
1
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429
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 10 months ago by ▴ 30 • written 11 months ago by ▴ 90
3
votes
7
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1.7k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
18 months ago Ortega-C ▴ 10
0
votes
0
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1.1k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
21 months ago gianni.drm • 0
0
votes
1
reply
887
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.9 years ago by ▴ 30 • written 4.3 years ago by • 0
3
votes
4
replies
1.6k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.5 years ago Matthew Thornton ▴ 380
1
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0
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2.0k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.1 years ago lm795 ▴ 10
0
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0
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1.2k
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Help with generating network from gene expression data
gene expression network cytoscape
6.8 years ago torgeirous • 0
6
votes
8
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9.3k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 6.9 years ago by ▴ 60 • written 7.5 years ago by ▴ 60
0
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1
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1.4k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by • 0
9 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k
For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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