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cytofWorkflow
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817
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FlowSOM with unrelated channels
FlowSOM
cytofWorkflow
updated 2.1 years ago by
helucro
▴ 70 • written 2.1 years ago by
Anirban
• 0
0
votes
2
replies
1.5k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
2.2 years ago • updated 2.1 years ago
shuangshuang
• 0
0
votes
1
reply
1.5k
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Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 2.2 years ago by
helucro
▴ 70 • written 2.2 years ago by
shuangshuang
• 0
0
votes
0
replies
986
views
flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
4.3 years ago
achaillon
• 0
0
votes
0
replies
713
views
CytofWorkflow and automate the classification of cellular sub-populations
cytofWorkflow
4.3 years ago
achaillon
• 0
0
votes
0
replies
892
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
4.4 years ago
GFM
▴ 20
0
votes
0
replies
799
views
diffcyt between cell populations
cytofWorkflow
diffcyt
4.4 years ago
GFM
▴ 20
2
votes
2
replies
1.8k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
808
views
how to a load workflow package
cytofworkflow
5.5 years ago
jianjunchencn
• 0
0
votes
1
reply
1.1k
views
some errors in cytofWorkflow2 description
cytofWorkflow
updated 6.6 years ago by
James W. MacDonald
68k • written 6.6 years ago by
o.hunewald
• 0
10 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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