Bioconductor CytofWorkflow

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FlowSOM cytofWorkflow

updated 22 months ago by helucro ▴ 70 • written 22 months ago by Anirban • 0

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grou heatmaps CyTOFpower cytofWorkflow

23 months ago shuangshuang • 0

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cytofWorkflow

updated 23 months ago by helucro ▴ 70 • written 23 months ago by shuangshuang • 0

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cytofWorkflow cytof diffcyt

4.1 years ago achaillon • 0

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cytofWorkflow

4.1 years ago achaillon • 0

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cytofWorkflow cytofworkflow flowCore

4.2 years ago GFM ▴ 20

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cytofWorkflow diffcyt

4.2 years ago GFM ▴ 20

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CATALYST cytofWorkflow

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by Brent.OCarrigan • 0

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756

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cytofworkflow

5.3 years ago jianjunchencn • 0

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cytofWorkflow

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by o.hunewald • 0

10 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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