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copywriter
•
reset
0
votes
2
replies
627
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
11 months ago
fer_talavera
• 0
0
votes
1
reply
755
views
CopywriteR output
CopywriteR
updated 11 months ago by
fer_talavera
• 0 • written 3.3 years ago by
Joshua
• 0
2
votes
4
replies
1.2k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.8 years ago by
oscarkrijgsman
▴ 20 • written 4.9 years ago by
Ram
▴ 220
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.5 years ago by
t.kuilman
▴ 170 • written 6.5 years ago by
magdaaverte
• 0
3
votes
12
replies
2.5k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
TriS
▴ 200
1
vote
2
replies
2.0k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.3k
views
Problems with CopywriteR
copywriter
updated 8.0 years ago by
t.kuilman
▴ 170 • written 8.0 years ago by
filipzembol
• 0
0
votes
1
reply
1.9k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.6 years ago by
t.kuilman
▴ 170 • written 8.6 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.6k
views
CopywriteR error: "Error in .Method"
CopywriteR
8.6 years ago
Tom
▴ 10
1
vote
3
replies
1.6k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.3k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
jcarter
• 0
2
votes
4
replies
2.7k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
jcarter
• 0
1
vote
2
replies
1.5k
views
Copywriter output looks strange
copywriter
9.0 years ago
MatthewGField
▴ 10
2
votes
9
replies
3.0k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.1 years ago by
smcnulty
• 0
0
votes
7
replies
2.3k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
smcnulty
• 0
0
votes
1
reply
1.6k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
sshung
• 0
2
votes
1
reply
1.5k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
Felix
• 0
17 results • Page
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Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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