Bioconductor CopywriteR

Showing : copywriteR • reset

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514

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CopywriteR CopyhelpeR

7 months ago fer_talavera • 0

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690

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CopywriteR

updated 7 months ago by fer_talavera • 0 • written 3.0 years ago by Joshua • 0

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1.1k

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copywriter cnv

updated 4.5 years ago by oscarkrijgsman ▴ 20 • written 4.5 years ago by Ram ▴ 210

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1.1k

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copywriter copynumber

updated 6.1 years ago by t.kuilman ▴ 170 • written 6.1 years ago by magdaaverte • 0

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2.3k

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s4vectors copywriter

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by TriS ▴ 200

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1.9k

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bioconductor biocparallel copywriter

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by genomic8328 ▴ 10

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1.3k

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copywriter

updated 7.6 years ago by t.kuilman ▴ 170 • written 7.6 years ago by filipzembol • 0

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1.8k

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copynumber cnvtools cnv copywriteR

updated 8.3 years ago by t.kuilman ▴ 170 • written 8.3 years ago by ahinsahr11 • 0

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1.6k

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CopywriteR

8.3 years ago Tom ▴ 10

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1.5k

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copywriter bam

updated 8.4 years ago by t.kuilman ▴ 170 • written 8.4 years ago by thestaroceanster • 0

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4.1k

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copywriter

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.7 years ago by jcarter • 0

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2.6k

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copywriter dnacopy

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.7 years ago by jcarter • 0

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1.4k

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copywriter

8.7 years ago MatthewGField ▴ 10

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2.8k

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CopywriteR copy number

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.8 years ago by smcnulty • 0

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2.2k

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copywriter slurm openMPI

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.7 years ago by smcnulty • 0

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1.5k

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copywriter bin size targeted sequencing

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.7 years ago by sshung • 0

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1.4k

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CopywriteR

updated 8.8 years ago by t.kuilman ▴ 170 • written 8.8 years ago by Felix • 0

17 results • Page 1 of 1

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Replies

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k