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copywriteR
•
reset
0
votes
2
replies
667
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
13 months ago • updated 12 months ago
fer_talavera
• 0
0
votes
1
reply
780
views
CopywriteR output
CopywriteR
updated 12 months ago by
fer_talavera
• 0 • written 3.5 years ago by
Joshua
• 0
2
votes
4
replies
1.2k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 5.0 years ago by
oscarkrijgsman
▴ 20 • written 5.0 years ago by
Ram
▴ 220
0
votes
1
reply
1.2k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.6 years ago by
t.kuilman
▴ 170 • written 6.6 years ago by
magdaaverte
• 0
3
votes
12
replies
2.6k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
TriS
▴ 200
1
vote
2
replies
2.0k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.4k
views
Problems with CopywriteR
copywriter
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
filipzembol
• 0
0
votes
1
reply
2.0k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.7k
views
CopywriteR error: "Error in .Method"
CopywriteR
8.8 years ago
Tom
▴ 10
1
vote
3
replies
1.7k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.9 years ago by
t.kuilman
▴ 170 • written 8.9 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.4k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
jcarter
• 0
2
votes
4
replies
2.8k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
jcarter
• 0
1
vote
2
replies
1.5k
views
Copywriter output looks strange
copywriter
9.2 years ago
MatthewGField
▴ 10
2
votes
9
replies
3.1k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
smcnulty
• 0
0
votes
7
replies
2.4k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
smcnulty
• 0
0
votes
1
reply
1.6k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.2 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
sshung
• 0
2
votes
1
reply
1.5k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 9.3 years ago by
t.kuilman
▴ 170 • written 9.3 years ago by
Felix
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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