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News: Bioconductor Course, Kenya 2025: Applications Open!
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
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News: Announcing the GBCC2025 Logo Design Contest!
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3 months ago Maria Doyle ▴ 100
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
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4 months ago Maria Doyle ▴ 100
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 100
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
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News: BioCAsia 2024 Registration Now Open!
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5 months ago Maria Doyle ▴ 100
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BioCAsia 2024 Abstract Deadline - August 26th
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5 months ago Maria Doyle ▴ 100
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341
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News: EuroBioC Updates: Important Deadlines
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5 months ago Maria Doyle ▴ 100
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299
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 100
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News: EuroBioC2024 Carpentries workshops Sep 2-3
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6 months ago Maria Doyle ▴ 100
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News: BioC2024 in-person registration closes soon (July 10)
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6 months ago Maria Doyle ▴ 100
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EuroBioC2024 Registration is Open!
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8 months ago Maria Doyle ▴ 100
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
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8 months ago Maria Doyle ▴ 100
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News: BioC2024 deadlines approaching
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9 months ago Maria Doyle ▴ 100
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
11 months ago Maria Doyle ▴ 100
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691
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News: Bioconductor.org website new design - We Need Your Input!
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18 months ago Maria Doyle ▴ 100
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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20 months ago Maria Doyle ▴ 100
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827
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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21 months ago Maria Doyle ▴ 100
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749
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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21 months ago Maria Doyle ▴ 100
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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21 months ago Maria Doyle ▴ 100
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News: BioC2023 abstract submission is now open!
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News: EuroBioC2023 abstract submission is open!
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647
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News: Bioconductor call for events!
Bioconductor events community
23 months ago Maria Doyle ▴ 100
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
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News: Seeking members for BioC2023 organizing committee
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2.0 years ago Maria Doyle ▴ 100
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814
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813
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News: Translation Hackathon (community event) announcement
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2.6 years ago kozo.nishida • 0
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Job: Bioconductor Community Manager
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2.7 years ago • updated 2.6 years ago Matthew Ritchie ▴ 1000
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855
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News: Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
bioconductoroversight community CAB
2.9 years ago shepherl 4.1k
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News: Join the Bioconductor Community Advisory Board
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3.0 years ago shepherl 4.1k
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News: Call for Community Volunteered Package Reviewers
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3.6 years ago • updated 3.5 years ago shepherl 4.1k
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975
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News: Nominations for Bioconductor Technical Advisory Board are open
community Bioconductor
3.7 years ago Charlotte Soneson ▴ 170
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1.0k
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News: Community engagement, outreach, and diversity award
awards bioc2021 recognition community Bioconductor
3.7 years ago shepherl 4.1k
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1.1k
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News: New Bioconductor Community Advisory Board Members for 2021
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3.8 years ago Matthew Ritchie ▴ 1000
4
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News: Join the Bioconductor Community Advisory Board
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updated 3.9 years ago by • 0 • written 4.0 years ago by ▴ 1000
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News: Community engagement and outreach award
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written 4.6 years ago by 4.1k
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News: Bioconductor Community Advisory Board Members
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4.8 years ago Matthew Ritchie ▴ 1000
7
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News: Bioconductor Community Advisory Board Nominees
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updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 1000
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899
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News: Results: Bioconductor Community Survey
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5.0 years ago Matthew Ritchie ▴ 1000
3
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News: Bioconductor Community Survey
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5.3 years ago Matthew Ritchie ▴ 1000
41 results • Page 1 of 1
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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…
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Bioconductor Course, Kenya 2025: Applications Open!
Comment: can't install tscR
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
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