Bioconductor Coldata

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801

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DESeq2 design coldata

updated 9 months ago by swbarnes2 ★ 1.4k • written 9 months ago by arfranco ▴ 130

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915

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ColData pheatmap DESeq2

written 20 months ago by dania.khalid • 0

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1.6k

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SingleCellExperiment colData rename

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by achoppe ▴ 10

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769

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BiSeq Coldata

4.7 years ago akhaira • 0

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1.9k

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deseq2 levels factor colData

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by ariel ▴ 20

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47k

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deseq2 coldata

updated 6.3 years ago by swbarnes2 ★ 1.4k • written 6.3 years ago by mjrarcher ▴ 10

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3.7k

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variantannotation coldata

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by lvclark ▴ 10

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4.3k

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deseq2 coldata NA

updated 6 months ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.2 years ago by Levi Waldron ★ 1.1k • written 7.2 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180