Bioconductor Coldata

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663

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DESeq2 design coldata

updated 6 months ago by swbarnes2 ★ 1.4k • written 6 months ago by arfranco ▴ 130

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789

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ColData pheatmap DESeq2

written 16 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 21 months ago by Basti ▴ 780 • written 21 months ago by achoppe ▴ 10

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710

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BiSeq Coldata

4.4 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by ariel ▴ 20

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45k

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deseq2 coldata

updated 6.0 years ago by swbarnes2 ★ 1.4k • written 6.0 years ago by mjrarcher ▴ 10

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3.5k

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variantannotation coldata

updated 6.1 years ago by Valerie Obenchain ★ 6.8k • written 6.1 years ago by lvclark ▴ 10

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4.1k

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deseq2 coldata NA

updated 12 weeks ago by Michael Love 42k • written 6.3 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 6.9 years ago by Levi Waldron ★ 1.1k • written 6.9 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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