Bioconductor ColData

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364

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DESeq2 design coldata

updated 5 weeks ago by swbarnes2 ★ 1.4k • written 6 weeks ago by arfranco ▴ 130

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592

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ColData pheatmap DESeq2

written 11 months ago by dania.khalid • 0

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1.1k

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SingleCellExperiment colData rename

updated 16 months ago by Basti ▴ 780 • written 16 months ago by achoppe ▴ 10

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594

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BiSeq Coldata

4.0 years ago akhaira • 0

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1.5k

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deseq2 levels factor colData

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by ariel ▴ 20

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43k

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deseq2 coldata

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by mjrarcher ▴ 10

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3.2k

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variantannotation coldata

updated 5.7 years ago by Valerie Obenchain ★ 6.8k • written 5.7 years ago by lvclark ▴ 10

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3.6k

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deseq2 coldata NA

updated 5.8 years ago by Michael Love 42k • written 5.9 years ago by t.kuilman ▴ 170

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1.5k

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multiassayexperiment colData

updated 6.5 years ago by Levi Waldron ★ 1.1k • written 6.5 years ago by Lluís Revilla Sancho ▴ 730

9 results • Page 1 of 1

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Hi James, thank you for your answer. I understand how the pvalue might be significant or not depending on the universe. But I still don't …

Comment: GESA with certain gene list returns no result with human genom, but many result by sawa • 0

Thank you so much! I did not know the rule that human genes are written in upper case and mouse in first letter capitalized format. When I …

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…

Comment: error loading collectTRI regulon by silvaesilva.da • 0

Fantastic. Thank you very much. Everything has been sorted out

Answer: DESeq2 returns results for group with just one replicate by James W. MacDonald 66k

There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …

Votes

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

Answer: DESeq2 returns results for group with just one replicate

Comment: error loading collectTRI regulon

Awards • All

Scholar to James W. MacDonald 66k