Bioconductor ColData

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766

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DESeq2 design coldata

updated 8 months ago by swbarnes2 ★ 1.4k • written 8 months ago by arfranco ▴ 130

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873

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ColData pheatmap DESeq2

written 19 months ago by dania.khalid • 0

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1.6k

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SingleCellExperiment colData rename

updated 23 months ago by Basti ▴ 780 • written 23 months ago by achoppe ▴ 10

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752

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BiSeq Coldata

4.7 years ago akhaira • 0

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1.9k

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deseq2 levels factor colData

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by ariel ▴ 20

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47k

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deseq2 coldata

updated 6.2 years ago by swbarnes2 ★ 1.4k • written 6.2 years ago by mjrarcher ▴ 10

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3.7k

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variantannotation coldata

updated 6.3 years ago by Valerie Obenchain ★ 6.8k • written 6.3 years ago by lvclark ▴ 10

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4.3k

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deseq2 coldata NA

updated 5 months ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.1 years ago by Levi Waldron ★ 1.1k • written 7.1 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: WGCNA sample-data preprocessing order by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. …

Answer: WGCNA: Can we use high power (26) for signed network? by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Answer: Ph.D. scholar by ATpoint ★ 4.6k

Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…

Comment: Recount3 data correspond to TCGA data by Fep29 • 0

Hi, This the solution to mapping TCGA ids in Recount3 to the ids used in the TCGA barcodes: library(recount3) human_projects <- …

Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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Popular Question to Robert Ivanek ▴ 750