Bioconductor ColData

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881

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DESeq2 design coldata

updated 11 months ago by swbarnes2 ★ 1.4k • written 11 months ago by arfranco ▴ 130

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994

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ColData pheatmap DESeq2

written 21 months ago by dania.khalid • 0

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1.8k

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SingleCellExperiment colData rename

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by achoppe ▴ 10

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806

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BiSeq Coldata

4.9 years ago akhaira • 0

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2.0k

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deseq2 levels factor colData

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ariel ▴ 20

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48k

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deseq2 coldata

updated 6.4 years ago by swbarnes2 ★ 1.4k • written 6.4 years ago by mjrarcher ▴ 10

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3.9k

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variantannotation coldata

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by lvclark ▴ 10

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4.5k

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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