Showing : cancer • reset
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
3 months ago xiaolong • 0
0
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1
reply
11k
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 11.3 years ago by ▴ 10
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votes
1
reply
780
views
BioC packages in cancer genomics
genomics cancer
updated 24 months ago by ★ 4.0k • written 2.0 years ago by ▴ 670
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0
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870
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
2.0 years ago Colm • 0
0
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0
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987
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
2.3 years ago DKFZ International PhD Program ▴ 10
1
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0
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1.1k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.6 years ago Andy Lynch ▴ 120
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0
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1.0k
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
2.7 years ago JAcky • 0
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0
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965
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.7 years ago Sarah • 0
0
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1
reply
1.4k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 21.0 years ago by ▴ 810
1
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969
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.9 years ago DKFZ International PhD Program ▴ 10
0
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1
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905
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WGCNA
Cancer
updated 3.3 years ago by ▴ 780 • written 3.3 years ago by • 0
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0
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1.0k
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.8 years ago • updated 3.5 years ago Gordon Smyth 52k
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0
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1.1k
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.9 years ago Daniel Brewer ▴ 100
0
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0
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1.2k
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
4.2 years ago Daniel Brewer ▴ 100
0
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0
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1.2k
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
4.4 years ago Daniel Brewer ▴ 100
2
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13
replies
1.8k
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
4
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7
replies
1.9k
views
Limma sample groups
microarray limma affy cancer
updated 4.4 years ago by 52k • written 4.4 years ago by • 0
0
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5
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3.2k
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 10
1
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6
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3.1k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 2.1 years ago by • 0 • written 4.5 years ago by • 0
0
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5
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2.6k
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 4.5 years ago by 43k • written 4.5 years ago by • 0
0
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0
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1.0k
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
5.0 years ago • updated 4.7 years ago Daniel Brewer ▴ 100
4
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10
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3.5k
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
1
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2
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5.0k
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.8 years ago by ★ 4.0k • written 4.9 years ago by • 0
0
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3
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1.7k
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.9 years ago by 4.1k • written 4.9 years ago by • 0
0
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1
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1.4k
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.9 years ago by ★ 3.0k • written 4.9 years ago by • 0
0
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0
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1.2k
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
5.0 years ago Shamith.Samarajiwa ▴ 180
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1.1k
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
5.0 years ago Patrick Kimes ▴ 10
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1.2k
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
5.3 years ago • updated 5.2 years ago marschaefer • 0
0
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0
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878
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
5.2 years ago luciomora8 • 0
0
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0
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1.0k
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
5.3 years ago Daniel Brewer ▴ 100
2
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3
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1.6k
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 13 months ago by • 0 • written 5.3 years ago by • 0
0
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0
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715
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miRNA and drugs
cancer
5.3 years ago maria.k.pagoni • 0
1
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0
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1.3k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
5.4 years ago Shamith.Samarajiwa ▴ 180
1
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0
replies
1.2k
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
5.5 years ago • updated 5.4 years ago Shamith.Samarajiwa ▴ 180
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0
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1.0k
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
5.4 years ago Johannes Rainer ★ 2.1k
1
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4
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1.6k
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.4 years ago by ▴ 120 • written 5.4 years ago by • 0
2
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1
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2.9k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 5.4 years ago by ▴ 840 • written 5.4 years ago by ▴ 20
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0
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928
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
5.4 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.1k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.5 years ago • updated 5.4 years ago sheneicechang • 0
0
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0
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871
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
5.5 years ago Ning Leng • 0
0
votes
5
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2.3k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
5.6 years ago mah19 • 0
0
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0
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985
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MatchGenes in Bumphunter - result list with multiple genes
cancer
5.7 years ago hanna_engqvist • 0
1
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0
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1.7k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.9 years ago • updated 5.7 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.1k
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
5.8 years ago jmaanaki • 0
0
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2
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1.1k
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Chromosomal location mapping for miRNAs
cancer
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 10
0
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3
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1.2k
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
1
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4
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1.2k
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
4
votes
1
reply
11k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 20
0
votes
1
reply
963
views
Help installing netReg
netReg cancer
5.9 years ago sbrackett007 • 0
2
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4
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1.5k
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.9 years ago s.goncalvesclaro ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
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