Showing : cancer • reset
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
5 months ago xiaolong • 0
0
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1
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11k
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 11.4 years ago by ▴ 10
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1
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806
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BioC packages in cancer genomics
genomics cancer
updated 2.1 years ago by ★ 4.0k • written 2.2 years ago by ▴ 670
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899
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
2.1 years ago Colm • 0
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0
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1.0k
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
2.4 years ago DKFZ International PhD Program ▴ 10
1
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0
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1.1k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.7 years ago Andy Lynch ▴ 120
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1.0k
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
2.8 years ago JAcky • 0
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0
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991
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.9 years ago Sarah • 0
0
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1
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1.5k
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An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 21.2 years ago by ▴ 810
1
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1.0k
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
3.0 years ago DKFZ International PhD Program ▴ 10
0
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1
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929
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WGCNA
Cancer
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by • 0
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1.0k
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
4.0 years ago • updated 3.6 years ago Gordon Smyth 52k
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1.1k
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
4.1 years ago Daniel Brewer ▴ 100
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0
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1.2k
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
4.4 years ago Daniel Brewer ▴ 100
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1.2k
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
4.5 years ago Daniel Brewer ▴ 100
2
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13
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1.9k
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
4
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7
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1.9k
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Limma sample groups
microarray limma affy cancer
updated 4.6 years ago by 52k • written 4.6 years ago by • 0
0
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5
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3.8k
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
1
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6
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3.5k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 2.2 years ago by • 0 • written 4.6 years ago by • 0
0
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5
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2.8k
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
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0
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1.1k
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
5.2 years ago • updated 4.8 years ago Daniel Brewer ▴ 100
4
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10
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3.7k
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by ▴ 10
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2
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5.2k
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 5.0 years ago by ★ 4.0k • written 5.1 years ago by • 0
0
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3
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1.8k
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 5.0 years ago by 4.1k • written 5.0 years ago by • 0
0
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1
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1.4k
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 5.1 years ago by ★ 3.0k • written 5.1 years ago by • 0
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0
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1.3k
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
5.2 years ago Shamith.Samarajiwa ▴ 180
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1.2k
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
5.2 years ago Patrick Kimes ▴ 10
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1.2k
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
5.4 years ago • updated 5.3 years ago marschaefer • 0
0
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0
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903
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
5.3 years ago luciomora8 • 0
0
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0
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1.1k
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
5.4 years ago Daniel Brewer ▴ 100
2
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3
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1.7k
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 15 months ago by • 0 • written 5.4 years ago by • 0
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0
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733
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miRNA and drugs
cancer
5.4 years ago maria.k.pagoni • 0
1
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0
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1.4k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
5.6 years ago • updated 5.5 years ago Shamith.Samarajiwa ▴ 180
1
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0
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1.2k
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
5.6 years ago • updated 5.5 years ago Shamith.Samarajiwa ▴ 180
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0
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1.1k
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
5.5 years ago Johannes Rainer ★ 2.1k
1
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4
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1.7k
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.5 years ago by ▴ 120 • written 5.5 years ago by • 0
2
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1
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3.0k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 5.6 years ago by ▴ 840 • written 5.6 years ago by ▴ 20
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0
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949
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
5.6 years ago Shamith.Samarajiwa ▴ 180
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0
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1.2k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.6 years ago sheneicechang • 0
0
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0
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899
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
5.6 years ago Ning Leng • 0
0
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5
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2.4k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
5.8 years ago mah19 • 0
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0
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1.0k
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MatchGenes in Bumphunter - result list with multiple genes
cancer
5.8 years ago hanna_engqvist • 0
1
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0
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1.7k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
6.0 years ago • updated 5.9 years ago Shamith.Samarajiwa ▴ 180
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0
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1.1k
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
5.9 years ago jmaanaki • 0
0
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2
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1.1k
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Chromosomal location mapping for miRNAs
cancer
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 10
0
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3
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1.3k
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
1
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4
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1.3k
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
4
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1
reply
11k
views
WGCNA-unable to install GO.db package
go cancer
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 20
0
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1
reply
993
views
Help installing netReg
netReg cancer
6.0 years ago sbrackett007 • 0
2
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4
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1.6k
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
6.0 years ago s.goncalvesclaro ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Awards • All
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Scholar to Gordon Smyth 52k
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