Showing : canceR • reset
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Job: Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging Epigenetics JobPosting Postdoctor Cancer
7 days ago xiaolong • 0
0
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1
reply
11k
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 11.0 years ago by ▴ 10
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votes
1
reply
711
views
BioC packages in cancer genomics
genomics cancer
updated 21 months ago by ★ 4.0k • written 21 months ago by ▴ 670
0
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0
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788
views
Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
21 months ago Colm • 0
0
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0
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900
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
2.0 years ago DKFZ International PhD Program ▴ 10
1
vote
0
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972
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.3 years ago Andy Lynch ▴ 120
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0
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933
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
2.4 years ago JAcky • 0
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0
replies
900
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.5 years ago Sarah • 0
0
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1
reply
1.4k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.8 years ago by ▴ 810
1
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899
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.6 years ago DKFZ International PhD Program ▴ 10
0
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1
reply
840
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WGCNA
Cancer
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
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0
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976
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.6 years ago • updated 3.2 years ago Gordon Smyth 51k
0
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0
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1.0k
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.7 years ago Daniel Brewer ▴ 100
0
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0
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1.1k
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.9 years ago Daniel Brewer ▴ 100
0
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0
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1.1k
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
4.1 years ago Daniel Brewer ▴ 100
2
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13
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1.6k
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
4
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7
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1.7k
views
Limma sample groups
microarray limma affy cancer
updated 4.2 years ago by 51k • written 4.2 years ago by • 0
0
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5
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2.7k
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by ▴ 10
1
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6
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2.6k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 21 months ago by • 0 • written 4.2 years ago by • 0
0
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5
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2.3k
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
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0
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972
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.8 years ago • updated 4.4 years ago Daniel Brewer ▴ 100
4
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10
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3.2k
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 10
1
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2
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4.7k
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.6 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
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3
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1.5k
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.6 years ago by 4.1k • written 4.6 years ago by • 0
0
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1
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1.3k
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.7 years ago by ★ 3.0k • written 4.7 years ago by • 0
0
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0
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1.1k
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.8 years ago • updated 4.7 years ago Shamith.Samarajiwa ▴ 180
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1.0k
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.7 years ago Patrick Kimes ▴ 10
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0
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1.1k
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
5.0 years ago • updated 4.9 years ago marschaefer • 0
0
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0
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821
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.9 years ago luciomora8 • 0
0
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0
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979
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
5.0 years ago Daniel Brewer ▴ 100
2
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3
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1.5k
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 10 months ago by • 0 • written 5.0 years ago by • 0
0
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0
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670
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miRNA and drugs
cancer
5.0 years ago maria.k.pagoni • 0
1
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0
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1.2k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
5.2 years ago • updated 5.1 years ago Shamith.Samarajiwa ▴ 180
1
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0
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1.1k
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
5.2 years ago • updated 5.1 years ago Shamith.Samarajiwa ▴ 180
0
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0
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983
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
5.1 years ago Johannes Rainer ★ 2.1k
1
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4
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1.5k
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.1 years ago by ▴ 120 • written 5.1 years ago by • 0
2
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1
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2.7k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 5.2 years ago by ▴ 830 • written 5.2 years ago by ▴ 20
0
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0
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879
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
5.2 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.1k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.2 years ago sheneicechang • 0
0
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0
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805
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
5.2 years ago Ning Leng • 0
0
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5
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2.1k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
5.4 years ago mah19 • 0
0
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0
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941
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MatchGenes in Bumphunter - result list with multiple genes
cancer
5.4 years ago hanna_engqvist • 0
1
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0
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1.6k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.6 years ago • updated 5.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.0k
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
5.5 years ago jmaanaki • 0
0
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2
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1.1k
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Chromosomal location mapping for miRNAs
cancer
updated 5.5 years ago by 67k • written 5.5 years ago by ▴ 10
0
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3
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1.2k
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
1
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4
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1.1k
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
4
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1
reply
10k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 20
0
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1
reply
900
views
Help installing netReg
netReg cancer
5.6 years ago sbrackett007 • 0
2
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4
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1.4k
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.6 years ago s.goncalvesclaro ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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