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bugs
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0
votes
11
replies
1.6k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
20 months ago
Zhenyu
• 0
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
2.3k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 6.6 years ago by
Robert Castelo
★ 3.3k • written 6.6 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.1k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
jeremydt
• 0
2
votes
3
replies
1.5k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.3k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.1k
views
Bugs for impute package
bugs
impute
7.7 years ago
Shicheng Guo
• 0
0
votes
4
replies
1.7k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
john.hu
• 0
0
votes
0
replies
1.5k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.5 years ago
wanghao1993333
• 0
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.3 years ago
cooketho
• 0
4
votes
3
replies
1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
daugherty_a
• 0
0
votes
4
replies
2.1k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 9.7 years ago by
Michael Love
42k • written 9.7 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.4k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
9.7 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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