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0
votes
11
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2.0k
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limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
2.6 years ago
Zhenyu
• 0
0
votes
2
replies
2.0k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
3.1k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 7.6 years ago by
Robert Castelo
★ 3.4k • written 7.6 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.3k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 7.9 years ago by
Rory Stark
★ 5.2k • written 7.9 years ago by
jeremydt
• 0
2
votes
3
replies
1.8k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.6k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
8.4 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.2k
views
Bugs for impute package
bugs
impute
8.6 years ago
Shicheng Guo
• 0
0
votes
4
replies
2.0k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 9.2 years ago by
Michael Love
43k • written 9.2 years ago by
john.hu
• 0
0
votes
0
replies
1.7k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
9.4 years ago
wanghao1993333
• 0
0
votes
2
replies
1.9k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
10.2 years ago
cooketho
• 0
4
votes
3
replies
1.7k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
daugherty_a
• 0
0
votes
4
replies
2.3k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 10.6 years ago by
Michael Love
43k • written 10.6 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.6k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
10.6 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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