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bioccheck
•
reset
7
votes
2
replies
1.5k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.3 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.1 years ago by
Steve Lianoglou
★ 13k • written 3.1 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.6 years ago
ullrich
▴ 20
0
votes
2
replies
858
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.7 years ago by
shepherl
4.1k • written 3.7 years ago by
wewolski
▴ 10
0
votes
2
replies
1.7k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.0 years ago
Hector
• 0
0
votes
1
reply
1.0k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.3 years ago by
James W. MacDonald
67k • written 5.3 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.2k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.4 years ago
j.flesch
▴ 10
0
votes
12
replies
1.4k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.5 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.7 years ago by
Hervé Pagès
16k • written 5.7 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.9k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.5 years ago by
shepherl
4.1k • written 6.5 years ago by
xyluo1991
• 0
2
votes
5
replies
2.2k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.5 years ago by
Marcel Ramos
700 • written 8.6 years ago by
richierocks
▴ 40
0
votes
1
reply
1.5k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.1 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.0k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.1 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
7.7 years ago • updated 7.6 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
998
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
ihnatova
• 0
3
votes
10
replies
2.9k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.2 years ago by
Marek Gierlinski
▴ 30 • written 8.2 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.7 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.1k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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Ali Barry
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★ 2.0k
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martin.grigorov
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James W. MacDonald
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