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bioccheck
•
reset
7
votes
2
replies
1.7k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.6 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.3k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.4 years ago by
Steve Lianoglou
★ 13k • written 3.4 years ago by
pouryany
• 0
0
votes
2
replies
1.2k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
4.0 years ago • updated 3.9 years ago
ullrich
▴ 20
0
votes
2
replies
931
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 4.0 years ago by
shepherl
4.1k • written 4.0 years ago by
wewolski
▴ 10
0
votes
2
replies
1.8k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.4 years ago
Hector
• 0
0
votes
1
reply
1.2k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.4k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.7 years ago
j.flesch
▴ 10
0
votes
12
replies
1.6k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.9 years ago
waterincan
• 0
0
votes
2
replies
1.2k
views
BiocCheck package size
BiocCheck
updated 6.0 years ago by
Hervé Pagès
16k • written 6.0 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.4k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.8 years ago by
shepherl
4.1k • written 6.8 years ago by
xyluo1991
• 0
2
votes
5
replies
2.3k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.8 years ago by
Marcel Ramos
700 • written 9.0 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.5 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.2k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.5 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
8.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.1k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
ihnatova
• 0
3
votes
10
replies
3.1k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.6 years ago by
Marek Gierlinski
▴ 30 • written 8.5 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.6k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
9.0 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.2k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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