Bioconductor Bed

Showing : bed • reset

votes

replies

1.3k

views

readTranscriptFeatures R genomation bed

updated 22 months ago by James W. MacDonald 67k • written 23 months ago by sat • 0

votes

replies

1.6k

views

bed bigBed rtracklayer ucsc

2.1 years ago • updated 2.0 years ago L ▴ 50

votes

replies

7.2k

views

rtracklayer R bed

updated 23 months ago by Walters • 0 • written 2.4 years ago by L ▴ 50

votes

1.1k

views

mappability bed python

updated 2.9 years ago by James W. MacDonald 67k • written 2.9 years ago by the • 0

votes

replies

5.9k

views

rtracklayer bed

updated 3.8 years ago by merv ▴ 140 • written 8.7 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

1.4k

views

rtracklayer bed genomicranges

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by foehn ▴ 100

votes

replies

929

views

sushi bed

6.2 years ago maltethodberg ▴ 180

votes

1.7k

views

bed vcf

updated 6.4 years ago by GENOMIC_region • 0 • written 6.4 years ago by Bogdan ▴ 670

votes

replies

1.6k

views

granges bed genomicranges genomeintervals deseq2

6.9 years ago rbronste ▴ 60

vote

replies

1.3k

views

rtracklayer bed software error

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by Ryan C. Thompson ★ 7.9k

votes

1.8k

views

coverage bed

updated 7.3 years ago by James W. MacDonald 67k • written 7.3 years ago by sgupt46 ▴ 10

votes

replies

1.5k

views

annotationhub bugs encode bed

8.0 years ago wcstcyx ▴ 30

vote

replies

3.0k

views

rtracklayer import bed

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by Peter Hickey ▴ 740

votes

replies

1.9k

views

gviz BED Ucsc UcscTrack

8.9 years ago Andy91 ▴ 60

vote

replies

1.6k

views

rtracklayer NA BED getseq

9.0 years ago Dimitris Polychronopoulos ▴ 80

votes

replies

2.3k

views

readvcf plink file conversion bed bioc-devel

9.7 years ago mjsduncan • 0

16 results • Page 1 of 1

Recent ...

Replies

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k