Showing : arrayqualitymetrics • reset
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900
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 3.0 years ago by ★ 13k • written 3.1 years ago by • 0
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3
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2.2k
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Error arrayQualityMetrics
arrayQualityMetrics
updated 3.2 years ago by ★ 6.6k • written 3.2 years ago by • 0
1
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1
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932
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 4.2 years ago by 67k • written 4.2 years ago by ▴ 10
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715
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Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 5.3 years ago by 67k • written 5.3 years ago by • 0
1
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3
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2.7k
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
8.5 years ago • updated 5.4 years ago Lluís Revilla Sancho ▴ 760
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857
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
5.5 years ago Mabeyer • 0
4
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4
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1.3k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 6.0 years ago by ★ 6.6k • written 6.0 years ago by ▴ 10
2
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1
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1.6k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by ▴ 30
1
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3
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1.3k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 7.2 years ago by ★ 6.6k • written 7.2 years ago by • 0
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2
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1.7k
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 7.3 years ago by 67k • written 7.3 years ago by • 0
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2
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1.3k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 8.1 years ago by ★ 13k • written 8.1 years ago by • 0
10
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10
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4.1k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 8.1 years ago by ▴ 10 • written 8.8 years ago by ▴ 10
2
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0
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1.3k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
8.2 years ago Bouzid.a ▴ 20
0
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2
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1.3k
views
array Quality Metrics
arrayqualitymetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 20
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5
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1.4k
views
quality control analysis
arrayqualitymetrics
updated 8.3 years ago by 67k • written 8.3 years ago by ▴ 20
6
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11
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4.1k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 8.5 years ago by ▴ 40 • written 10.0 years ago by ▴ 200
0
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0
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1.4k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.7 years ago 13117882295 • 0
1
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2
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2.7k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.8 years ago by 52k • written 8.8 years ago by • 0
2
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4
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2.5k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 9.0 years ago by ★ 13k • written 9.0 years ago by ▴ 30
1
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1
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1.5k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 10
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3
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1.8k
views
Unable to execute java by using the Rscript
arrayqualitymetrics java r
9.5 years ago aaryan • 0
4
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6
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4.7k
views
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.9 years ago rachelwright8 ▴ 10
4
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3
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1.6k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 10.1 years ago by 67k • written 10.1 years ago by • 0
0
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0
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1.3k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
10.6 years ago Wolfgang Huber ★ 13k
0
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4
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1.5k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.8 years ago by ▴ 750 • written 10.8 years ago by ▴ 300
0
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1
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1.7k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 20
0
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4
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2.6k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ★ 13k
0
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0
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1.1k
views
maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.9 years ago Agnes Paquet ▴ 30
3
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1
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2.0k
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arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 11.1 years ago by 67k • written 11.1 years ago by ▴ 50
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1
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1.8k
views
arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ▴ 50
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3
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1.6k
views
arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 11.2 years ago by ▴ 10 • written 11.2 years ago by ★ 13k
0
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1
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1.1k
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 11.2 years ago by ★ 13k • written 11.3 years ago by ★ 13k
0
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1
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1.4k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
11.3 years ago cstrato ★ 3.9k
0
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3
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1.6k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ▴ 40
0
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3
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1.2k
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need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ▴ 20
0
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2
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2.0k
views
arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 480
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3
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1.5k
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arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 12.1 years ago by 67k • written 12.1 years ago by ▴ 20
0
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8
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2.6k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 12.1 years ago by 67k • written 12.1 years ago by ▴ 290
0
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1
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1.1k
views
missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 90
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4
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1.5k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 280
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2
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1.6k
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reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
12.5 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.6k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 12.5 years ago by ★ 13k • written 12.5 years ago by 52k
0
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0
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1.2k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.6 years ago Daniel Aaen Hansen ▴ 90
0
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0
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1.2k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.7 years ago Wolfgang Huber ★ 13k
0
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0
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1.2k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
12.7 years ago Wolfgang Huber ★ 13k
0
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1
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1.2k
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DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 50
0
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8
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1.9k
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Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.8 years ago Rosalind Cutts ▴ 20
0
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1
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1.3k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 4.3k
1
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2
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2.7k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.8 years ago Guest User ★ 13k
0
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6
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1.6k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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