Showing : arrayQualityMetrics • reset
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 2.5 years ago by ★ 13k • written 2.5 years ago by • 0
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1.9k
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Error arrayQualityMetrics
arrayQualityMetrics
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
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798
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 3.7 years ago by 66k • written 3.7 years ago by ▴ 10
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601
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Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 4.7 years ago by 66k • written 4.7 years ago by • 0
1
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3
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2.5k
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.9 years ago • updated 4.9 years ago Lluís Revilla Sancho ▴ 730
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
4.9 years ago Mabeyer • 0
4
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4
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1.2k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.5 years ago by ★ 6.5k • written 5.5 years ago by ▴ 10
2
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1
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1.4k
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arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.4 years ago by ★ 6.5k • written 6.5 years ago by ▴ 30
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 6.7 years ago by ★ 6.5k • written 6.7 years ago by • 0
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2
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1.5k
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 6.8 years ago by 66k • written 6.8 years ago by • 0
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2
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1.2k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 7.5 years ago by ★ 13k • written 7.5 years ago by • 0
10
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10
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3.8k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.6 years ago by ▴ 10 • written 8.3 years ago by ▴ 10
2
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0
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1.1k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
7.6 years ago Bouzid.a ▴ 20
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2
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1.1k
views
array Quality Metrics
arrayqualitymetrics
updated 7.7 years ago by ★ 13k • written 7.7 years ago by ▴ 20
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5
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1.3k
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quality control analysis
arrayqualitymetrics
updated 7.7 years ago by 66k • written 7.7 years ago by ▴ 20
6
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11
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3.8k
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arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.9 years ago by ▴ 40 • written 9.5 years ago by ▴ 200
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1.2k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.1 years ago 13117882295 • 0
1
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2
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2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.2 years ago by 50k • written 8.2 years ago by • 0
2
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4
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2.3k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 30
1
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1
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1.3k
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arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
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3
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1.7k
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Unable to execute java by using the Rscript
arrayqualitymetrics java r
9.0 years ago aaryan • 0
4
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6
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4.5k
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arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.4 years ago rachelwright8 ▴ 10
4
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3
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1.5k
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arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.6 years ago by 66k • written 9.6 years ago by • 0
0
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1.2k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
10.0 years ago Wolfgang Huber ★ 13k
0
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4
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1.4k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.2 years ago by ▴ 750 • written 10.2 years ago by ▴ 300
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1
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1.5k
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Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ▴ 20
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4
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2.5k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
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0
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1.0k
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.4 years ago Agnes Paquet ▴ 30
3
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1
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1.9k
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arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.5 years ago by 66k • written 10.5 years ago by ▴ 50
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1.7k
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arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ▴ 50
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3
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1.5k
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arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ▴ 10 • written 10.7 years ago by ★ 13k
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1
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950
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arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ★ 13k
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1
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1.2k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
10.8 years ago cstrato ★ 3.9k
0
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3
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1.4k
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XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 10.8 years ago by ★ 3.9k • written 10.8 years ago by ▴ 40
0
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3
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1.1k
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need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 20
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2
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1.8k
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arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 480
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3
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1.3k
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arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 11.6 years ago by 66k • written 11.6 years ago by ▴ 20
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8
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2.4k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.6 years ago by 66k • written 11.6 years ago by ▴ 290
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1.0k
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missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 90
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4
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1.4k
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Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ▴ 280
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2
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1.5k
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reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
12.0 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.4k
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reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 12.0 years ago by ★ 13k • written 12.0 years ago by 50k
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0
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1.1k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.0 years ago Daniel Aaen Hansen ▴ 90
0
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0
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1.1k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.2 years ago Wolfgang Huber ★ 13k
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1.1k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
12.2 years ago Wolfgang Huber ★ 13k
0
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1
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1.1k
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DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 50
0
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8
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1.7k
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Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.2 years ago Rosalind Cutts ▴ 20
0
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1
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1.2k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 4.3k
1
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2
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2.6k
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arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.2 years ago Guest User ★ 13k
0
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6
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1.4k
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arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.3 years ago by ▴ 10
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Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
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Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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