Showing : XCMS • reset
0
votes
1
reply
187
views
XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 11 weeks ago by 68k • written 11 weeks ago by • 0
1
vote
3
replies
848
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
1
reply
586
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 6 months ago by • 0 • written 6 months ago by ▴ 10
0
votes
2
replies
3.3k
views
Error: BiocParallel errors
xcms msdata BiocParallel
19 months ago mavamay • 0
0
votes
0
replies
721
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
22 months ago Abrianna • 0
0
votes
1
reply
775
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 2.0 years ago by ★ 4.8k • written 2.0 years ago by • 0
0
votes
0
replies
593
views
XCMS normalization
xcms
2.1 years ago T.RU • 0
0
votes
1
reply
832
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.2 years ago by • 0 • written 2.5 years ago by ▴ 10
0
votes
0
replies
614
views
dont find xcmsSet for peak analysis
xcms
2.5 years ago aline.lafise • 0
1
vote
4
replies
1.9k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 2.7 years ago by • 0 • written 4.4 years ago by ▴ 30
0
votes
0
replies
885
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.9 years ago mba • 0
5
votes
5
replies
1.4k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 3.0 years ago by ★ 2.1k • written 3.0 years ago by ▴ 20
0
votes
3
replies
1.8k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
votes
0
replies
878
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
3.4 years ago noerman • 0
0
votes
4
replies
18k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
2
replies
1.7k
views
colMax is not exported from the xcms package
xcms
3.9 years ago Habil Zare ▴ 200
0
votes
0
replies
932
views
Mass spec intensity difference
xcms
4.0 years ago Phytochem • 0
0
votes
0
replies
928
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
4.0 years ago abrsoule ▴ 30
0
votes
0
replies
1.7k
views
BiocParallel errors with xcms
BiocParallel xcms
4.0 years ago Yuki ▴ 10
1
vote
3
replies
1.3k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 4.4 years ago by ★ 2.1k • written 4.4 years ago by ▴ 10
0
votes
1
reply
2.0k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 4.4 years ago by 1.6k • written 4.4 years ago by • 0
0
votes
3
replies
1.5k
views
Use xcms but mzR occurs error
software error xcms
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
4
replies
1.9k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
3
votes
2
replies
1.2k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 4.8 years ago by ★ 2.1k • written 4.8 years ago by ▴ 30
1
vote
2
replies
1.4k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 4.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 30
0
votes
3
replies
2.2k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.9 years ago by ★ 2.1k • written 4.9 years ago by • 0
2
votes
13
replies
2.6k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
5.6 years ago abrsoule ▴ 30
0
votes
5
replies
1.6k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.6 years ago by 1.6k • written 5.6 years ago by • 0
2
votes
6
replies
2.0k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 5.7 years ago by ★ 2.1k • written 5.7 years ago by ▴ 10
0
votes
1
reply
1.5k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
5.7 years ago garfield320 ▴ 30
2
votes
1
reply
1.5k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
6.0 years ago abrsoule ▴ 30
0
votes
4
replies
3.3k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
6.0 years ago lmg • 0
0
votes
0
replies
1.3k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
6.1 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
1.6k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 6.2 years ago by • 0 • written 6.4 years ago by ★ 2.1k
0
votes
4
replies
1.8k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
6.6 years ago cpataki • 0
0
votes
9
replies
4.2k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
6.6 years ago goh • 0
3
votes
1
reply
1.2k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 6.6 years ago by 1.6k • written 6.6 years ago by • 0
0
votes
1
reply
1.9k
views
XCMS for GC-MS
xcms GC-MS
6.7 years ago Joe • 0
0
votes
4
replies
2.4k
views
Chromatographic peak detection failed for all files
xcms
6.8 years ago yuchiu • 0
0
votes
1
reply
1.8k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.9 years ago by ★ 2.1k • written 6.9 years ago by • 0
2
votes
4
replies
1.6k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.1 years ago james.dalgleish ▴ 30
1
vote
2
replies
3.6k
views
ReadMSData problem with xcms
xcms readmsdata
updated 7.4 years ago by ★ 2.1k • written 7.4 years ago by ▴ 30
1
vote
5
replies
3.6k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
7.4 years ago bhgyu ▴ 30
5
votes
7
replies
2.8k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.5 years ago by ★ 2.1k • written 7.5 years ago by ▴ 30
2
votes
1
reply
2.4k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 7.8 years ago by • 0 • written 9.1 years ago by ▴ 20
0
votes
2
replies
1.5k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 7.8 years ago by 1.6k • written 7.8 years ago by • 0
0
votes
0
replies
1.2k
views
xcmsFragments extract product fragment
xcms xcms2
7.8 years ago riccardo.romoli • 0
1
vote
4
replies
2.1k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 5 months ago by • 0 • written 8.0 years ago by • 0
1
vote
1
reply
1.5k
views
xcms warning message
R xcms warning message
updated 8.3 years ago by ★ 2.1k • written 8.3 years ago by • 0
0
votes
1
reply
1.5k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
8.3 years ago buescher • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards • All
Popular Question to bd2000 ▴ 30
Popular Question to shepherl 4.1k
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to Gordon Smyth 52k
Locations • All
United States, 52 minutes ago
United States, 1 hour ago
India, 1 hour ago
The city by the bay, 1 hour ago
United States, 3 hours ago
Traffic: 425 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6