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WGCNA
•
reset
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.2 years ago by
brohawndg
▴ 150
1
vote
5
replies
3.3k
views
adjacency function of WGCNA
wgcna
7.7 years ago
wlnjseu
• 0
1
vote
8
replies
4.4k
views
WGCNA error : Error in hclust
WGCNA
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.4 years ago by
lwang.daniel
▴ 10
5
votes
6
replies
6.7k
views
WGCNA - module membership via max kME?
wgcna
modules
updated 6.5 years ago by
Peter Langfelder
★ 3.0k • written 6.6 years ago by
ly.leifels
▴ 10
0
votes
4
replies
2.5k
views
some wgcna issues
wgcna
9.1 years ago
zhouxiuqing
• 0
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
shalinisonar13
▴ 20
3
votes
6
replies
1.4k
views
Questions on Pigengene
Pigengene
WGCNA
updated 6.2 years ago by
Habil Zare
▴ 200 • written 6.2 years ago by
boting.m.ning
• 0
3
votes
4
replies
3.4k
views
interactive networks from WGCNA clusters
wgcna
rcytoscape
updated 7.9 years ago by
branislav misovic
▴ 120 • written 7.9 years ago by
christopher.clarskon15
▴ 20
4
votes
3
replies
1.0k
views
WGCNA documentation not available
WGCNA
written 5 months ago by
ramonmassoni
▴ 10
1
vote
5
replies
1.3k
views
Error in sizeRestrictedClusterMerge: replace is not a multiple of replacement length
wgcna
updated 5.0 years ago by
Peter Langfelder
★ 3.0k • written 5.0 years ago by
Lluís Revilla Sancho
▴ 730
1
vote
3
replies
1.1k
views
Wired modules WGCNA cluster dendrogam
wgcna
updated 7.4 years ago by
Peter Langfelder
★ 3.0k • written 7.4 years ago by
Sindre
▴ 70
5
votes
8
replies
3.9k
views
Problem about picking soft threshold power in WGCNA software
wgcna
rnaseq
written 7.2 years ago by
panagiotis.mokos
▴ 40
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
jol.espinoz
▴ 40
3
votes
4
replies
2.4k
views
Question about WGCNA soft thresholding value
wgcna
7.3 years ago
jessewilson13
• 0
14
votes
4
replies
14k
views
WGCNA Hub Gene Selection Method
WGCNA
Hub Genes
KmE
Intramodular Connectivity
updated 8.8 years ago by
Peter Langfelder
★ 3.0k • written 8.8 years ago by
brohawndg
▴ 150
0
votes
2
replies
557
views
Trouble generating a dendrogram with colored gene modules using WGCNA for large RNA-seq experiment
WGCNA
written 5 months ago by
aehall26
• 0
2
votes
9
replies
4.0k
views
Deseq2 normalization for WGCNA
RNASeq
Deseq2
DESeq2
WGCNA
updated 2.0 years ago by
Michael Love
42k • written 2.4 years ago by
jms2520
▴ 10
1
vote
6
replies
2.4k
views
WGCNA with distance matrix only from newick data.
WGCNA
eigengene
hub genes
6.5 years ago
yifangt
▴ 20
2
votes
7
replies
3.1k
views
WGCNA: Topological Overlap Matrix (TOM) Values Greater Than 1
WGCNA
3.6 years ago
teresisc
▴ 10
7
votes
4
replies
2.8k
views
Minimum number of samples per treatment/group for WGCNA analysis
WGCNA
RNA-seq
GCN
gene coexpression network
updated 5.0 years ago by
agustin.gonvi
▴ 20 • written 5.0 years ago by
Mau
▴ 50
2
votes
3
replies
1.7k
views
Interpretaion of dendrogram height in WGCNA?
WGCNA
coexpression network
updated 4.3 years ago by
Peter Langfelder
★ 3.0k • written 4.3 years ago by
huynguyen96.dnu
▴ 30
0
votes
5
replies
1.7k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 13 months ago by
mauricio.microbiol
• 0
11
votes
5
replies
7.4k
views
Theoretical WGCNA Question
WGCNA
Theory
Scale-Free Topology
updated 28 days ago by
Garrett
• 0 • written 9.1 years ago by
brohawndg
▴ 150
0
votes
4
replies
1.6k
views
WGCNA soft threshold with methylation data but no scale-free topology
methylation
EPIC
scale-free topology
WGCNA
updated 16 months ago by
shuo
• 0 • written 4.7 years ago by
enora.fremy
• 0
1
vote
2
replies
2.7k
views
WGNCA kME vs. kIM
WGCNA
updated 12 months ago by
brukti
• 0 • written 8.7 years ago by
akridgerunner
▴ 30
2
votes
6
replies
4.7k
views
Error running TOMplot in WGCNA package
wgcna
network
updated 9.6 years ago by
Keith Hughitt
▴ 180 • written 9.6 years ago by
Jon Bråte
▴ 250
0
votes
4
replies
4.0k
views
WGCNA grey module
WGCNA
updated 13 months ago by
Abir.khazaal
▴ 10 • written 6.0 years ago by
amnahsiddiqa
▴ 10
2
votes
2
replies
1.6k
views
WGCNA - module membership preservation for low count genes
wgcna
6.8 years ago
ly.leifels
▴ 10
4
votes
6
replies
5.5k
views
WGCNA automatic vs manual network creation
WGCNA
updated 8.6 years ago by
Peter Langfelder
★ 3.0k • written 8.6 years ago by
akridgerunner
▴ 30
0
votes
2
replies
238
views
WGCNA: analysis of complex trait associations with regressions
Regression
WGCNA
7 weeks ago • updated 6 weeks ago
w.cookson
• 0
0
votes
2
replies
4.2k
views
WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
mrodrigues.fernanda
▴ 10
2
votes
3
replies
4.2k
views
WGCNA TOMType specification
WGCNA
network analysis
Sign
6.7 years ago • updated 6.0 years ago
aurora.savino
▴ 10
12
votes
4
replies
3.9k
views
WGCNA following salmon/DESeq2
deseq2
wgcna
salmon
updated 5.5 years ago by
Peter Langfelder
★ 3.0k • written 5.5 years ago by
maya.kappil
▴ 30
0
votes
2
replies
2.7k
views
WGCNA - Using real data for tutorial III
pathways
wgcna
network
rna-seq
8.3 years ago
hywel.williams
• 0
1
vote
2
replies
2.3k
views
WGCNA small number of genes
WGCNA
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
zson3366
▴ 10
3
votes
5
replies
7.4k
views
WGCNA HELP - Error: REAL() can only be applied to a 'numeric', not a 'integer'
wgcna
rnaseq
R
bioconductor
updated 8.3 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
sm15766
▴ 30
3
votes
5
replies
7.7k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
8.4 years ago • updated 8.0 years ago
dvillarlozano
▴ 10
3
votes
6
replies
2.7k
views
WGCNA normalized CDF to use, WGCNA Intramodular connectivity
wgcna
affymetrix microarrays
affy
updated 8.8 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
akridgerunner
▴ 30
4
votes
2
replies
3.4k
views
WGCNA: Relating Modules to Categorical External Traits
WGCNA
BetweenGroupComparison
8.5 years ago
mjc5038
▴ 30
2
votes
3
replies
2.8k
views
WGCNA cytoscape export question
WGCNA
updated 8.8 years ago by
Peter Langfelder
★ 3.0k • written 8.8 years ago by
akridgerunner
▴ 30
8
votes
4
replies
7.0k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna
plotDendroAndColors
Network
updated 9.7 years ago by
Peter Langfelder
★ 3.0k • written 9.7 years ago by
Keith Hughitt
▴ 180
1
vote
2
replies
2.3k
views
DESeq2 residuals log transformation input for WGCNA
deseq2
residuals
wgcna
updated 7.1 years ago by
Steve Lianoglou
★ 13k • written 7.1 years ago by
glmazzo
▴ 10
1
vote
3
replies
1.9k
views
WGCNA clustering configuration
clustering
wgcna
microarray
updated 8.0 years ago by
Peter Langfelder
★ 3.0k • written 8.0 years ago by
Lluís Revilla Sancho
▴ 730
4
votes
5
replies
2.2k
views
WGCNA network visualisation in RCyjs
WGCNA
rcytoscape
network analysis
updated 7.9 years ago by
Paul Shannon
▴ 470 • written 7.9 years ago by
christopher.clarskon15
▴ 20
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 3.4 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.7 years ago by
jol.espinoz
▴ 40
11
votes
8
replies
8.6k
views
Pre-processing of RNA-Seq data for WGCNA and DGE
WGCNA
RNA-Seq
DESeq2
voom
removebatcheffect()
updated 7.7 years ago by
Peter Langfelder
★ 3.0k • written 7.7 years ago by
gokce.ouz
▴ 70
9
votes
7
replies
4.2k
views
WGCNA: relate modules to binary trait
WGCNA
module
eigengene
binary trait
R
updated 5.4 years ago by
pedrostrusso
▴ 30 • written 5.4 years ago by
Lin
▴ 50
1
vote
2
replies
1.9k
views
problem with WGCNA script: dissTOM
wgcna
updated 8.5 years ago by
Peter Langfelder
★ 3.0k • written 8.5 years ago by
agattorosso
• 0
2
votes
3
replies
2.7k
views
WGCNA Cohort Question
wgcna
updated 9.0 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
akridgerunner
▴ 30
11
votes
3
replies
4.9k
views
WGCNA - Signed vs signed hybrid networks
wgcna
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
bram.verstockt
▴ 20
50 results • Page
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
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▴ 150
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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