Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
TimeCourse
•
reset
0
votes
1
reply
490
views
DESeq2
org.Mmu.eg.db
DESeq2
TimeCourse
DMSOvsdrug
RNASeqData
updated 4 days ago by
ATpoint
★ 4.8k • written 5 days ago by
Cosmic
• 0
0
votes
1
reply
347
views
Is my time course analysis with DESeq2 valid?
GeneExpression
DESeq2
TimeCourse
updated 4 months ago by
Michael Love
43k • written 4 months ago by
Jason
• 0
2
votes
4
replies
581
views
RNASeq Time Course Question
DESeq2
RNASeq
TimeCourse
5 months ago
jihoon.kim.1495
▴ 10
1
vote
3
replies
802
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 10 months ago by
Gordon Smyth
52k • written 10 months ago by
Ashley
• 0
0
votes
2
replies
645
views
What to the log 2 fold changes mean using LRT on time course in DESeq2
DESeq2
timecourse
DifferentialExpression
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
joshua.mannheimer
• 0
0
votes
1
reply
568
views
Behavior of most genes in Ribosome-footprints dataset deviates from expected
DESeq2
timecourse
time
updated 14 months ago by
Michael Love
43k • written 14 months ago by
Anastasiia
• 0
0
votes
1
reply
618
views
DESeq Design for Time-Series Analysis
RNASeq
DESeq2
timecourse
14 months ago
WS
• 0
1
vote
6
replies
3.3k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 8.4 years ago by
Camila Orellana
▴ 10
1
vote
6
replies
2.7k
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 19 months ago by
ATpoint
★ 4.8k • written 19 months ago by
Debebe
• 0
2
votes
1
reply
1.1k
views
DESeq2 time course using fitted splines
RNASeqData
TimeCourse
DESeq2
timecoursedata
updated 9 months ago by
Michael Love
43k • written 21 months ago by
georgii.vdovin
• 0
4
votes
5
replies
3.1k
views
DESeq2, time-course interpretation
Transcriptomics
TimeCourse
DESeq2
updated 20 months ago by
Michael Love
43k • written 21 months ago by
smac_head
• 0
0
votes
1
reply
848
views
DESeq2 + analysis question for design with uneven time point design
timecourse
KEGG
DESeq2
updated 22 months ago by
Michael Love
43k • written 22 months ago by
Fred
• 0
0
votes
1
reply
886
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 2.3 years ago by
Michael Love
43k • written 2.4 years ago by
arshad1292
• 0
3
votes
2
replies
1.3k
views
time-series analysis using EdgeR
timecourse
edgeR
updated 2.8 years ago by
Gordon Smyth
52k • written 2.8 years ago by
Mug_qd
• 0
0
votes
2
replies
3.1k
views
Deseq2 Time series - 2 treatments 1 control 6 Time Points
timecourse
DESeq2
updated 2.8 years ago by
jeroen.gilis
▴ 90 • written 2.8 years ago by
Maria
• 0
0
votes
1
reply
986
views
DESeq2 TimeCourse with alpha and ihw and genes that change up to a certain timepoint
TimeCourse
DESeq2
Manual
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
mat.lesche
▴ 110
0
votes
1
reply
887
views
Need of some clarifications
TimeCourse
DifferentialExpression
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
AZ
▴ 30
0
votes
3
replies
1.3k
views
DEseq2 extracting results from multifactor design
timecourse
DESeq2
RNASeq
updated 3.6 years ago by
Michael Love
43k • written 3.6 years ago by
Akhil
• 0
5
votes
9
replies
2.1k
views
Time series DE gene analysis with edgeR where specific timepoints have NA levels across different patients
edgeR
RNASeq
DifferentialExpression
TimeCourse
updated 3.7 years ago by
James W. MacDonald
68k • written 3.7 years ago by
svlachavas
▴ 840
0
votes
2
replies
911
views
extracting within time-point differences from time-series model
DESeq2
TimeCourse
3.9 years ago
serpalma.v
▴ 60
0
votes
2
replies
1.2k
views
time couse RNAseq experiment 2 treatments x 4 times
edgeR
timecourse
4.0 years ago
Lina
▴ 10
0
votes
2
replies
1.1k
views
edgeR - Chapter 4.8 Time Course RNAseq experiments
edgeR
TimeCourse
RNASeq
updated 4.0 years ago by
Gordon Smyth
52k • written 4.1 years ago by
Lina
▴ 10
1
vote
1
reply
3.4k
views
DESeq2 time course analysis
DESeq2
Timecourse
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
K.
• 0
34
votes
29
replies
16k
views
[DESeq2] time series strain-specific differences over time
deseq2
timecourse
updated 6 months ago by
Michael Love
43k • written 10.1 years ago by
john
▴ 130
1
vote
1
reply
1.1k
views
DESeq2 timecourse experiments
deseq2
timecourse
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
sconosciuto
• 0
0
votes
3
replies
1.1k
views
RNA seq time course design using DESeq2
deseq2
timecourse
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
jackiesalzbank
• 0
0
votes
2
replies
1.2k
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
DcL-A
• 0
2
votes
3
replies
1.1k
views
Drug response pre- and post-treatment between timepoints across conditions
RNA-seq
Paired design
Timecourse
Diagnosis
Covariates
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
ibrahim.akkouh
• 0
0
votes
3
replies
1.3k
views
DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
5.5 years ago
cp1015
• 0
4
votes
18
replies
26k
views
DEseq2 time-series design.
deseq2
timecourse
design
updated 5.8 years ago by
simon baldwin
• 0 • written 10.4 years ago by
shao
▴ 100
0
votes
3
replies
1.4k
views
Is it possible to use DESeq2 likelihood ratio test for time-course analysis to analyse MNase-Seq data?
timecourse
mnase-seq
deseq2
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
santos.migueldm
• 0
1
vote
5
replies
1.8k
views
Timecourse gene expression analysis with DESeq2
timecourse
deseq2
multiple factor design
LRT
updated 6.3 years ago by
Michael Love
43k • written 6.3 years ago by
juditkovacsbio
• 0
2
votes
4
replies
1.5k
views
RNA-seq time course experiment - LRT design hep
deseq2
lrt
timecourse
6.5 years ago
Maithê Barros
▴ 10
1
vote
1
reply
1.5k
views
Time Series Analysis
timecourse
deseq2
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
CE
▴ 20
0
votes
0
replies
1.0k
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge
differential gene expression
timecourse
interaction
6.6 years ago
rubi
▴ 110
0
votes
3
replies
1.3k
views
time series RNA-seq allowing time offset between individuals
edgeR
deseq2
rna-seq
timecourse
fittimeseries
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
jpsf
• 0
1
vote
4
replies
1.6k
views
Analysis Time course data using DESeq2
deseq2
timecourse
multiple time points
time-series
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
zhangfei-123
• 0
2
votes
3
replies
1.9k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
ap874
• 0
2
votes
2
replies
1.5k
views
another contrast question - edgeR + scRNA-seq + timecourse
edger
single cell
design and contrast matrix
timecourse
updated 6.9 years ago by
Gordon Smyth
52k • written 6.9 years ago by
regan.hayward
• 0
1
vote
4
replies
2.6k
views
How to perform time-course differential expression with "erroneous" baseline in edgeR?
edger
differential expression
timecourse
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
Enzo Castillejos
• 0
2
votes
4
replies
1.6k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 7.1 years ago by
ellascottgm
• 0 • written 7.1 years ago by
Verena
• 0
0
votes
0
replies
1.3k
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
7.3 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
8
replies
2.0k
views
edgeR: multi-subject time series analysis
timecourse
multiple groups
edgeR
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
BharathAnanth
▴ 80
0
votes
3
replies
1.4k
views
How is the within-subject correlation modeled in time course experiments in DESeq2
deseq2
timecourse
updated 7.3 years ago by
Wolfgang Huber
★ 13k • written 7.4 years ago by
Roula
• 0
4
votes
7
replies
3.1k
views
GLM model on time course analysis and removing the outliers in Deseq2
deseq2
GLM
timecourse
updated 7.4 years ago by
Michael Love
43k • written 8.2 years ago by
rahel14350
▴ 10
0
votes
8
replies
1.9k
views
Time course experiments
deseq2
timecourse
7.4 years ago
uu2110
• 0
2
votes
3
replies
2.3k
views
What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
deseq2
timecourse
updated 2.8 years ago by
chm
• 0 • written 7.5 years ago by
santos.migueldm
• 0
6
votes
19
replies
4.5k
views
Time course analysis in DESeq2: handling common baseline for two experimental conditions
deseq2
timecourse
multiple factor design
RNAseq analysis
differential gene expression
updated 7.5 years ago by
Gavin Kelly
▴ 690 • written 7.5 years ago by
c.nicole
▴ 50
4
votes
8
replies
2.6k
views
edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
edgeR
edger "glmqlftest()"
timecourse
model
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
heikki.sarin
▴ 10
0
votes
0
replies
1.4k
views
How construct a model for case-control time-course experiment in DEXseq?
dexseq
timecourse
model.matrix
model
7.7 years ago
heikki.sarin
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
solarsunyy
• 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object
by
chillykean
• 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA
by
dirty.cougar.risi
• 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash
by
Michael Love
43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
by
James W. MacDonald
68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Awards
• All
Scholar
to
Michael Love
43k
Popular Question
to
Rob
• 0
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
Le
• 0
Locations
• All
United States,
29 minutes ago
Ukraine,
44 minutes ago
France,
1 hour ago
United States,
1 hour ago
France,
1 hour ago
Traffic: 710 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6