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Answer: Differential expression of proteins using somascan data
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James W. MacDonald
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Providing a bunch of code but not the output is not very helpful. Ideally you would just provide
```
nrow(design)
ncol(protein_data_lo…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
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Hi Snow,
Thanks for your comment! I didn't do any normalization of the counts prior to the DEXseq pipeline - I've only been using the inte…
Comment: Using tximport for kallisto aligned TOIL data
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Sorry, I misspoke. The data was from the TOIL project and was aligned using kallisto. It was accessed from the UCSC XENA browser. I updated…
Comment: Using tximport for kallisto aligned recount2 data
by
ATpoint
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recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
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Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
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