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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
4.8 years ago
Aditya
▴ 160
0
votes
1
reply
799
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Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
4.8 years ago
Aditya
▴ 160
2
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2
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1.1k
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SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
brendan.innes
▴ 20
0
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3
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1.1k
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How to clear a cached S4 method
devtools
S4
methods
cache
5.5 years ago
Michael Steinbaugh
▴ 90
0
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0
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928
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.4 years ago
casey.rimland
▴ 160
5 results • Page
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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Votes
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
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