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Showing :
Subread
•
reset
5
votes
4
replies
733
views
RSubread output significantly different from bash Subread output
Subread
Rsubread
updated 6 weeks ago by
ATpoint
★ 4.6k • written 6 weeks ago by
Aimee
• 0
0
votes
4
replies
763
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts
Subread
Bioconductor
6 months ago • updated 5 months ago
Jessica
• 0
4
votes
2
replies
868
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor
featurecounts
subread
7 months ago
Rachael
• 0
0
votes
0
replies
899
views
Subread2.0.3 featureCounts segmentation fault when loading gtf file
Subread
GTF
featureCounts
segmentationfault
23 months ago
yao hua
• 0
0
votes
1
reply
1.1k
views
Subread installation on Linux ARM64
subread
featureCounts
updated 23 months ago by
Yang Liao
▴ 450 • written 24 months ago by
Keyu
• 0
1
vote
1
reply
2.9k
views
Quantification of Genes with RSubread::featureCounts() at exon-level vs gene-level?
Subread
RNASeq
featureCounts
quantification
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Sara
• 0
0
votes
0
replies
786
views
Option request for featureCounts: Add an order of read manipulation to 'shift > reduction > extension'
SubRead
featureCounts
updated 2.2 years ago by
ATpoint
★ 4.6k • written 2.2 years ago by
Leon
• 0
2
votes
2
replies
1.0k
views
featureCounts: No effect of setting -d and -D?
subread
featureCounts
2.3 years ago
dario.beraldi
• 0
0
votes
1
reply
4.4k
views
gff3 file for featureCounts
gtf/gff3
subread
featureCounts
updated 2.5 years ago by
Gordon Smyth
52k • written 2.5 years ago by
selmanurkeskin
• 0
0
votes
1
reply
1.1k
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
2.7 years ago • updated 2.6 years ago
NIK
• 0
3
votes
11
replies
4.6k
views
The low successful assignment ratio of FeatureCounts
FeatureCounts
Rsubread
Subread
2.8 years ago • updated 2.7 years ago
Sarah_piggy
▴ 10
1
vote
1
reply
898
views
Threads on Subread
Slurm
Subread
updated 2.8 years ago by
ATpoint
★ 4.6k • written 2.8 years ago by
sha-ked
• 0
1
vote
4
replies
2.3k
views
Subread installation
subread
featureCounts
2.8 years ago
Lucy
▴ 60
0
votes
0
replies
927
views
SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align
Alignment
subread
2.8 years ago
saira
• 0
1
vote
5
replies
2.7k
views
featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
subread
Rsubread
featureCounts
RNA-seq
2.9 years ago
Lucy
▴ 60
4
votes
4
replies
5.9k
views
FeatureCounts
counts
subread
RNASeq
featurecounts
3.2 years ago
k___
▴ 30
1
vote
1
reply
1.5k
views
Make featureCounts ignore soft clip and insertions when for calculating read overlap
subread
featureCounts
updated 3.5 years ago by
Wei Shi
★ 3.6k • written 3.5 years ago by
dario.beraldi
• 0
1
vote
5
replies
6.2k
views
featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
subread
featureCounts
updated 18 months ago by
Yang Liao
▴ 450 • written 3.6 years ago by
s.muroy
▴ 10
2
votes
2
replies
2.2k
views
Error when loading annotation featureCounts
featureCounts
Rsubread
subread
CellBiology
updated 3.9 years ago by
Yang Liao
▴ 450 • written 3.9 years ago by
Jason
• 0
1
vote
5
replies
3.1k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 4.6 years ago by
James W. MacDonald
67k • written 4.6 years ago by
abano
• 0
3
votes
4
replies
3.9k
views
Collecting unmapped RNA-seq reads
subread
read mapping
unmapped reads
written 5.4 years ago by
Patrick
• 0
0
votes
2
replies
1.2k
views
Problem in featureCounts file.
rna-seq
featureCounts
SubRead
updated 5.5 years ago by
Wei Shi
★ 3.6k • written 5.5 years ago by
hafiz.talhamalik
• 0
1
vote
2
replies
3.3k
views
Can't run with gff3 file
subread
featureCounts
gtf/gff/gff3
updated 5.5 years ago by
Gordon Smyth
52k • written 5.5 years ago by
algenubi81
• 0
4
votes
2
replies
1.4k
views
subread gives segfaults when supplied with falsely-identified paired end reads
subread
Rsubread
updated 5.8 years ago by
Gordon Smyth
52k • written 5.8 years ago by
Jonathan Griffiths
▴ 90
1
vote
1
reply
3.6k
views
featureCounts for ATAC-seq
subread
featurecounts
atac
updated 5.8 years ago by
Wei Shi
★ 3.6k • written 5.8 years ago by
aurel.nagy
▴ 10
0
votes
1
reply
1.2k
views
Index genome generation with Subread for colorspace data
subread
solid-seq data
colorspace
rna-seq
updated 5.8 years ago by
Yang Liao
▴ 450 • written 5.8 years ago by
gokberk
• 0
0
votes
5
replies
2.6k
views
featureCounts error : SAM_pairer_iterate_tags
subread
featureCounts
updated 6.0 years ago by
Gordon Smyth
52k • written 6.0 years ago by
leo_CD
• 0
4
votes
3
replies
1.4k
views
RSubread in cygwin
subread
6.0 years ago
Diana
▴ 10
0
votes
6
replies
1.9k
views
Options Request for FeatureCounts
featurecounts
subread
updated 6.4 years ago by
Wei Shi
★ 3.6k • written 6.4 years ago by
Leon
• 0
4
votes
5
replies
1.7k
views
Perfectly aligning sequences not mapping to worm genome with Subread-align?
featurecounts
rnaseq
subread
updated 6.4 years ago by
Gordon Smyth
52k • written 6.4 years ago by
rogangrant
• 0
3
votes
2
replies
3.4k
views
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
subread
featurecounts
dexseq
rnaseq
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
JennyS
• 0
3
votes
2
replies
2.7k
views
Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts
subread
featurecounts
updated 7.7 years ago by
Wei Shi
★ 3.6k • written 7.7 years ago by
jma1991
▴ 70
2
votes
2
replies
1.6k
views
reporting multi-mapping locations in Subread-align
subread
Rsubread
updated 9.0 years ago by
Wei Shi
★ 3.6k • written 9.0 years ago by
Vivek.b
▴ 100
33 results • Page
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It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!
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