Bioconductor Splicing

Showing : Splicing • reset

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623

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splicing limma edgeR

updated 9 months ago by Gordon Smyth 52k • written 9 months ago by scoops_streams_06 • 0

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701

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transcriptome splicing assembly

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Marianna ▴ 20

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.6 years ago NIK • 0

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870

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.2 years ago noahhelton98 ▴ 20

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2.9k

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edger normalization differential exon usage splicing

updated 4.2 years ago by Yunshun Chen ▴ 900 • written 4.2 years ago by oakhamwolf • 0

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1.4k

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DEXSeq Splicing Exon Usage

4.9 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 4.9 years ago by lhddiallo • 0 • written 6.6 years ago by csijst • 0

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.1 years ago stuart ▴ 10

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1.8k

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genomicalignments splicing coverage

updated 5.2 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 5.9 years ago by Alejandro Reyes ★ 1.9k • written 5.9 years ago by rtunney2 • 0

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2.0k

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deseq2 splicing

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by yannickwurm • 0

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1.7k

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DRIMSeq splicing differential isoform usage

updated 7.9 years ago by Gosia Nowicka ▴ 90 • written 7.9 years ago by kristoffer.vittingseerup ▴ 20

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3.1k

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sgseq splicing alternative splicing

updated 8.8 years ago by Leonard Goldstein ▴ 260 • written 8.8 years ago by vakul.mohanty ▴ 20

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1.9k

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microarray splicing

updated 8.9 years ago by Sonika Tyagi ▴ 20 • written 10.2 years ago by gv ▴ 40

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1.6k

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DEXSeq splicing python SAM

9.2 years ago Fiona ▴ 70

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2.4k

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SGSeq analyzeFeatures Splicing

10.0 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

Recent ...

Replies

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40