Bioconductor SpikeIn

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627

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sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn

updated 5 months ago by ATpoint ★ 4.8k • written 5 months ago by Katerina • 0

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484

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SpikeIn DESeq2 Normalization

written 7 months ago by ADopico • 0

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699

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SpikeIn RUVSeq DESeq2 RUV

updated 9 months ago by Michael Love 43k • written 9 months ago by Ειρήνη • 0

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362

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DiffBind Errorinsocketconnection SpikeIn

12 months ago Virangika • 0

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866

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SpikeIn DiffBind

2.1 years ago Weisheng • 0

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3.7k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 2.2 years ago by ATpoint ★ 4.8k • written 2.2 years ago by kalavattam ▴ 10

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2.5k

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DESeq2 SpikeIn Normalization

updated 11 months ago by maria.soler • 0 • written 2.2 years ago by kalavattam ▴ 10

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2.6k

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DiffBind SpikeIn Normalization ChIP-seq csaw

2.3 years ago spg • 0

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1.2k

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DiffBind ChIPSeq Normalization SpikeIn

3.5 years ago Drew • 0

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966

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SpikeIn SingleCell

3.6 years ago mb1996 • 0

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1.6k

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ChIPSeq SpikeIn edgeR Normalization

3.7 years ago maria.soler • 0

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5.3k

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edgeR SpikeIn RNASeq

updated 18 months ago by Miguel • 0 • written 4.1 years ago by robert.chen • 0

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4.1k

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 2.4 years ago by Bogdan ▴ 670 • written 4.4 years ago by Hesh ▴ 10

13 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Votes

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170