Bioconductor SpikeIn

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440

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sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn

updated 3 months ago by ATpoint ★ 4.6k • written 3 months ago by Katerina • 0

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401

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SpikeIn DESeq2 Normalization

written 5 months ago by ADopico • 0

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575

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SpikeIn RUVSeq DESeq2 RUV

updated 6 months ago by Michael Love 43k • written 7 months ago by Ειρήνη • 0

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323

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DiffBind Errorinsocketconnection SpikeIn

9 months ago Virangika • 0

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817

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SpikeIn DiffBind

23 months ago Weisheng • 0

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3.2k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 2.0 years ago by ATpoint ★ 4.6k • written 2.0 years ago by kalavattam ▴ 10

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2.3k

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DESeq2 SpikeIn Normalization

updated 8 months ago by maria.soler • 0 • written 2.0 years ago by kalavattam ▴ 10

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2.4k

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DiffBind SpikeIn Normalization ChIP-seq csaw

2.1 years ago spg • 0

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1.1k

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DiffBind ChIPSeq Normalization SpikeIn

3.3 years ago Drew • 0

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922

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SpikeIn SingleCell

3.4 years ago mb1996 • 0

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1.5k

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ChIPSeq SpikeIn edgeR Normalization

3.5 years ago maria.soler • 0

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4.9k

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edgeR SpikeIn RNASeq

updated 16 months ago by Miguel • 0 • written 3.9 years ago by robert.chen • 0

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3.9k

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 2.2 years ago by Bogdan ▴ 670 • written 4.3 years ago by Hesh ▴ 10

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Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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