Bioconductor SpikeIn

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 17 months ago by Bogdan ▴ 670 • written 3.6 years ago by Hesh ▴ 10

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3.8k

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edgeR SpikeIn RNASeq

updated 7 months ago by Miguel • 0 • written 3.2 years ago by robert.chen • 0

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1.1k

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ChIPSeq SpikeIn edgeR Normalization

2.8 years ago maria.soler • 0

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1.7k

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DiffBind SpikeIn Normalization ChIP-seq csaw

17 months ago • updated 16 months ago spg • 0

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594

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SpikeIn DiffBind

14 months ago Weisheng • 0

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1.8k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 15 months ago by ATpoint ★ 4.1k • written 15 months ago by kalavattam ▴ 10

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1.5k

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DESeq2 SpikeIn Normalization

updated 6 days ago by maria.soler • 0 • written 15 months ago by kalavattam ▴ 10

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713

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SpikeIn SingleCell

2.7 years ago mb1996 • 0

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105

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DiffBind Errorinsocketconnection SpikeIn

4 weeks ago Virangika • 0

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914

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DiffBind ChIPSeq Normalization SpikeIn

2.6 years ago Drew • 0

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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