Bioconductor SpikeIn

Showing : SpikeIn • reset

votes

replies

105

views

DiffBind Errorinsocketconnection SpikeIn

4 weeks ago Virangika • 0

vote

replies

594

views

SpikeIn DiffBind

14 months ago Weisheng • 0

votes

replies

1.8k

views

DESeq2 SpikeIn Normalization DifferentialExpression

updated 15 months ago by ATpoint ★ 4.1k • written 15 months ago by kalavattam ▴ 10

votes

replies

1.5k

views

DESeq2 SpikeIn Normalization

updated 6 days ago by maria.soler • 0 • written 15 months ago by kalavattam ▴ 10

votes

replies

1.7k

views

DiffBind SpikeIn Normalization ChIP-seq csaw

17 months ago • updated 16 months ago spg • 0

votes

replies

913

views

DiffBind ChIPSeq Normalization SpikeIn

2.6 years ago Drew • 0

votes

replies

712

views

SpikeIn SingleCell

2.7 years ago mb1996 • 0

votes

replies

1.1k

views

ChIPSeq SpikeIn edgeR Normalization

2.8 years ago maria.soler • 0

votes

replies

3.8k

views

edgeR SpikeIn RNASeq

updated 7 months ago by Miguel • 0 • written 3.2 years ago by robert.chen • 0

vote

replies

3.0k

views

CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 17 months ago by Bogdan ▴ 670 • written 3.6 years ago by Hesh ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

Awards • All