Showing : STRINGdb • reset
4
votes
9
replies
1.6k
views
Get_interactions is giving the combined score
STRINGdb
updated 9 months ago by • 0 • written 9 months ago by ▴ 20
0
votes
3
replies
565
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 10 months ago by ▴ 110 • written 10 months ago by • 0
1
vote
3
replies
682
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 10 months ago by ▴ 110 • written 10 months ago by • 0
0
votes
3
replies
1.1k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 11 months ago by ▴ 110 • written 11 months ago by • 0
0
votes
6
replies
2.1k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 13 months ago by • 0 • written 14 months ago by • 0
0
votes
2
replies
941
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
16 months ago Luca • 0
2
votes
5
replies
3.0k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 12 months ago by ▴ 110 • written 17 months ago by • 0
0
votes
1
reply
616
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
19 months ago robynne.braun • 0
0
votes
7
replies
2.0k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 20 months ago by ▴ 110 • written 20 months ago by • 0
0
votes
0
replies
1.0k
views
Issues setting background in STRINGdb
STRINGdb MSstats
22 months ago samsiljee • 0
2
votes
2
replies
1.9k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
2.1 years ago Charlotte Soneson ▴ 170
2
votes
3
replies
1.3k
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
3.0 years ago AstrobioMike • 0
1
vote
2
replies
1.6k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
3.1 years ago Abhishek • 0
2
votes
4
replies
2.7k
views
STRINGdb string_db$map error
STRINGdb HELP
updated 2.2 years ago by ▴ 10 • written 3.2 years ago by ▴ 10
0
votes
6
replies
3.0k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
3.3 years ago • updated 3.2 years ago Wolfgang RAFFELSBERGER ▴ 140
2
votes
9
replies
3.0k
views
STRINGdb images very low quality?
STRINGdb
updated 3.3 years ago by ▴ 110 • written 3.4 years ago by ▴ 30
3
votes
4
replies
3.2k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 3.3 years ago by ▴ 110 • written 3.5 years ago by ▴ 10
0
votes
3
replies
1.9k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 3.6 years ago by ▴ 110 • written 3.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
Error in mapping the gene names to the STRINGdb identifiers
PPI STRINGdb
updated 3.6 years ago by ▴ 110 • written 3.7 years ago by ▴ 10
0
votes
0
replies
1.3k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
3.8 years ago choijamts • 0
0
votes
1
reply
2.6k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
1
vote
1
reply
1.2k
views
How to find the source code of the package STRINGdb ?
STRINGdb Bioconductor
updated 4.2 years ago by 4.1k • written 4.2 years ago by ▴ 10
0
votes
1
reply
1.0k
views
How can I download all supported species information table of STRINGdb V11
STRINGdb STRING
updated 4.4 years ago by 6.7k • written 4.4 years ago by • 0
0
votes
15
replies
3.3k
views
Is the STRINGdb server down?
STRINGdb R protein
updated 5.9 years ago by • 0 • written 6.1 years ago by • 0
2
votes
4
replies
2.0k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
5.9 years ago Moosa • 0
0
votes
2
replies
1.7k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
6.1 years ago Samuel Lee • 0
0
votes
1
reply
1.3k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
6.4 years ago wsciekly.maciek ▴ 10
0
votes
1
reply
1.1k
views
error with STRINGdb package to download the graph
stringdb R
6.8 years ago Salvo88 ▴ 20
0
votes
1
reply
1.4k
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 7.1 years ago by ▴ 110 • written 7.1 years ago by ▴ 20
0
votes
4
replies
1.7k
views
problem with get_link function
STRINGdb get_link bug
7.3 years ago cristinapasi • 0
0
votes
0
replies
1.3k
views
Problem with link generated with R using the string_db$get_link
stringdb
8.0 years ago Ilario De Toma ▴ 10
0
votes
3
replies
2.9k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by • 0
1
vote
2
replies
1.7k
views
string-db.org link not working in generated graphic
STRINGdb
8.4 years ago • updated 8.3 years ago florian.reisinger • 0
0
votes
1
reply
1.7k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
8.6 years ago Lluís Revilla Sancho ▴ 760
1
vote
2
replies
2.2k
views
How to export a STRINGDB network to XML
STRINGdb
updated 10.0 years ago by ▴ 10 • written 10.0 years ago by ▴ 160
35 results • Page 1 of 1
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Replies
Comment: Differing results with DESeq2 by JKim • 0
I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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