Bioconductor RefSeq

Showing : RefSeq • reset

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1.0k

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refseq Bioconductor conversion

4.3 years ago heiko_kin ▴ 60

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747

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RefSeq Chromosome Mutalyzer

5.0 years ago heiko_kin ▴ 60

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2.5k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by holmkn • 0

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3.3k

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edgeR ENEMBL RefSeq

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by mzillur • 0

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2.9k

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genomicfeatures maketxdbfromucsc refseq

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Sebastien Vigneau ▴ 10

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4.2k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by gokcen.eraslan ▴ 10

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3.3k

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promoter granges refseq ucsc organismdb

updated 9.4 years ago by Robert Castelo ★ 3.4k • written 9.4 years ago by efoss ▴ 10

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4.1k

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refseq annotationhub

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by dalloliogm ▴ 50

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1.9k

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customprodb dbsnp refseq varianttools

updated 9.7 years ago by xiaojing.wang ▴ 50 • written 9.7 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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