Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RefSeq
•
reset
0
votes
0
replies
1.1k
views
How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
4.4 years ago
heiko_kin
▴ 60
0
votes
0
replies
760
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
5.0 years ago
heiko_kin
▴ 60
0
votes
5
replies
2.6k
views
Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport
Gene IDs
txdb
RefSeq
Salmon
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
holmkn
• 0
1
vote
3
replies
3.3k
views
ENSEBL gene_ID in edgeR analysis
edgeR
ENEMBL
RefSeq
updated 6.1 years ago by
Gordon Smyth
52k • written 6.1 years ago by
mzillur
• 0
6
votes
7
replies
2.9k
views
makeTxDbFromUCSC fails to download refLink table
genomicfeatures
maketxdbfromucsc
refseq
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Sebastien Vigneau
▴ 10
8
votes
7
replies
4.2k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.4k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 9.4 years ago by
Robert Castelo
★ 3.4k • written 9.4 years ago by
efoss
▴ 10
4
votes
1
reply
4.1k
views
getting the longest transcript by gene from Refseq
refseq
annotationhub
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
dalloliogm
▴ 50
2
votes
2
replies
1.9k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 9.8 years ago by
xiaojing.wang
▴ 50 • written 9.8 years ago by
kristenbeck527
• 0
9 results • Page
1 of 1
Recent ...
Replies
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards
• All
Autobiographer
to
Paul Harrison
▴ 100
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Kinnary
▴ 20
Popular Question
to
sergisayolspuig
▴ 80
Popular Question
to
richardallenfriedmanbrooklyn
▴ 30
Locations
• All
United States,
8 minutes ago
Denmark,
21 minutes ago
United States,
23 minutes ago
EMBL Heidelberg,
1 hour ago
Germany,
2 hours ago
Traffic: 1034 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6