Bioconductor RefSeq

Showing : RefSeq • reset

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1.0k

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refseq Bioconductor conversion

4.2 years ago heiko_kin ▴ 60

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698

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RefSeq Chromosome Mutalyzer

4.8 years ago heiko_kin ▴ 60

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2.4k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by holmkn • 0

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3.2k

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edgeR ENEMBL RefSeq

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by mzillur • 0

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2.8k

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genomicfeatures maketxdbfromucsc refseq

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Sebastien Vigneau ▴ 10

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4.0k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by gokcen.eraslan ▴ 10

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3.2k

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promoter granges refseq ucsc organismdb

updated 9.2 years ago by Robert Castelo ★ 3.4k • written 9.2 years ago by efoss ▴ 10

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4.0k

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refseq annotationhub

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by dalloliogm ▴ 50

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1.9k

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customprodb dbsnp refseq varianttools

updated 9.6 years ago by xiaojing.wang ▴ 50 • written 9.6 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0