Bioconductor RUVnormalize

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354

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RUVSeq RUVnormalize

7 months ago Erdi ▴ 10

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350

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RUVSeq RUVnormalize

9 months ago Ειρήνη • 0

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1.2k

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

22 months ago AZ ▴ 30

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3.1k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

2.7 years ago Mohamed ▴ 30

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764

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RUVnormalize protein mi

6.4 years ago losik • 0

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1.3k

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RUVnormalize limma corrected expression matrix microarray

updated 7.1 years ago by Dario Strbenac ★ 1.6k • written 7.1 years ago by massimo.acquaviva.78 • 0

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3.0k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.6 years ago by davide risso ▴ 980 • written 7.6 years ago by Nik Tuzov ▴ 90

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2.8k

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RUV ruvseq ruvr ruvnormalize single cell

7.6 years ago Nik Tuzov ▴ 90

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1.5k

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edger ruvseq rnaseq normalization ruvnormalize

updated 7.7 years ago by davide risso ▴ 980 • written 7.7 years ago by manish20072013 • 0

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.6 years ago anthonycolombo60 • 0

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1.8k

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normalization ruvseq ruvnormalize ruvs eda

8.9 years ago • updated 8.8 years ago thomas.wolfe • 0

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1.5k

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rnaseq ruvnormalize normalization technical replicates

9.2 years ago thomas.wolfe • 0

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1.5k

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ruvnormalize microarray normalization

updated 9.7 years ago by laurent.jacob ▴ 10 • written 9.7 years ago by Cornwell, Adam ▴ 110

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1.4k

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RUVNormalize Subsetting

updated 9.7 years ago by laurent.jacob ▴ 10 • written 9.8 years ago by Dario Strbenac ★ 1.6k

14 results • Page 1 of 1

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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…

Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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Popular Question to Matthew McCormack ▴ 180

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