Showing : RUVnormalize • reset
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RUVg spike-in assumption global expression
RUVSeq RUVnormalize
4 months ago Erdi ▴ 10
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262
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determine k during RUVSeq
RUVSeq RUVnormalize
6 months ago Ειρήνη • 0
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2
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1.1k
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
19 months ago AZ ▴ 30
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4
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2.8k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
2.4 years ago Mohamed ▴ 30
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1
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726
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
6.1 years ago losik • 0
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2
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1.2k
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 6.9 years ago by ★ 1.5k • written 6.9 years ago by • 0
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9
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 7.3 years ago by ▴ 980 • written 7.3 years ago by ▴ 90
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3
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2.7k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
7.3 years ago Nik Tuzov ▴ 90
2
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1
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1.5k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 7.4 years ago by ▴ 980 • written 7.4 years ago by • 0
2
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1
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1.8k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
8.4 years ago anthonycolombo60 • 0
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6
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1.7k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
8.6 years ago thomas.wolfe • 0
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1.5k
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
9.0 years ago thomas.wolfe • 0
1
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1
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1.4k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 9.4 years ago by ▴ 10 • written 9.5 years ago by ▴ 110
2
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1
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1.4k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 9.4 years ago by ▴ 10 • written 9.5 years ago by ★ 1.5k
14 results • Page 1 of 1
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Replies
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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