Bioconductor RUVNormalize

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349

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RUVSeq RUVnormalize

7 months ago Erdi ▴ 10

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344

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RUVSeq RUVnormalize

9 months ago Ειρήνη • 0

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1.2k

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

22 months ago AZ ▴ 30

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3.0k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

2.7 years ago Mohamed ▴ 30

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761

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RUVnormalize protein mi

6.3 years ago losik • 0

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1.2k

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RUVnormalize limma corrected expression matrix microarray

updated 7.1 years ago by Dario Strbenac ★ 1.6k • written 7.1 years ago by massimo.acquaviva.78 • 0

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3.0k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.5 years ago by davide risso ▴ 980 • written 7.6 years ago by Nik Tuzov ▴ 90

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2.8k

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RUV ruvseq ruvr ruvnormalize single cell

7.6 years ago Nik Tuzov ▴ 90

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1.5k

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edger ruvseq rnaseq normalization ruvnormalize

updated 7.7 years ago by davide risso ▴ 980 • written 7.7 years ago by manish20072013 • 0

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.6 years ago anthonycolombo60 • 0

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1.8k

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normalization ruvseq ruvnormalize ruvs eda

8.8 years ago thomas.wolfe • 0

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1.5k

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rnaseq ruvnormalize normalization technical replicates

9.2 years ago thomas.wolfe • 0

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1.5k

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ruvnormalize microarray normalization

updated 9.7 years ago by laurent.jacob ▴ 10 • written 9.7 years ago by Cornwell, Adam ▴ 110

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1.4k

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RUVNormalize Subsetting

updated 9.7 years ago by laurent.jacob ▴ 10 • written 9.8 years ago by Dario Strbenac ★ 1.6k

14 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

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Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: Plot title for PCA in DESeq2

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