Showing : RUVNormalize • reset
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RUVg spike-in assumption global expression
RUVSeq RUVnormalize
4 months ago Erdi ▴ 10
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257
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determine k during RUVSeq
RUVSeq RUVnormalize
6 months ago Ειρήνη • 0
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2
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1.1k
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
19 months ago AZ ▴ 30
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4
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2.7k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
2.4 years ago Mohamed ▴ 30
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1
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723
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
6.1 years ago losik • 0
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2
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1.2k
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 6.8 years ago by ★ 1.5k • written 6.8 years ago by • 0
2
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9
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2.9k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 7.3 years ago by ▴ 980 • written 7.3 years ago by ▴ 90
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3
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2.6k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
7.3 years ago Nik Tuzov ▴ 90
2
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1
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1.5k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 7.4 years ago by ▴ 980 • written 7.4 years ago by • 0
2
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1
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1.8k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
8.3 years ago anthonycolombo60 • 0
2
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6
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1.7k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
8.6 years ago thomas.wolfe • 0
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1.5k
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
8.9 years ago thomas.wolfe • 0
1
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1
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1.4k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 9.4 years ago by ▴ 10 • written 9.4 years ago by ▴ 110
2
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1
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1.4k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 9.4 years ago by ▴ 10 • written 9.5 years ago by ★ 1.5k
14 results • Page 1 of 1
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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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