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RUVNormalize
•
reset
0
votes
0
replies
125
views
determine k during RUVSeq
RUVSeq
RUVnormalize
7 weeks ago
Ειρήνη
• 0
1
vote
2
replies
954
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
15 months ago • updated 14 months ago
AZ
▴ 30
0
votes
4
replies
2.3k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.0 years ago
Mohamed
▴ 30
0
votes
1
reply
649
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.7 years ago
losik
• 0
0
votes
2
replies
1.1k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.5 years ago by
Dario Strbenac
★ 1.5k • written 6.5 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.9 years ago by
davide risso
▴ 950 • written 6.9 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.4k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.9 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.3k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.0 years ago by
davide risso
▴ 950 • written 7.0 years ago by
manish20072013
• 0
2
votes
1
reply
1.6k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.0 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.5k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.2 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.3k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.6 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.3k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.0 years ago by
laurent.jacob
▴ 10 • written 9.1 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.3k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.0 years ago by
laurent.jacob
▴ 10 • written 9.1 years ago by
Dario Strbenac
★ 1.5k
13 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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